Cow genome map

Conread name: Ss1.1-Pig4-TMW8033N04.3

Conread position: 143-578
Cow position: chr14:3061748-3061314 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 10

Conread position: 147-575
Cow position: chr14:3101171-3100749 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 269
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 300, 6

Conread position: 147-585
Cow position: chr14:3155405-3155843 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 148-398
Cow position: chr14:3127521-3127271 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 172
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 148-406
Cow position: chr14:25836968-25837226 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 164
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 60, 69

Conread position: 148-527
Cow position: chr14:25836548-25836927 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 231
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 59, 69

Conread position: 148-533
Cow position: chr14:25895447-25895832 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 255
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 59, 67

Conread position: 148-538
Cow position: chr14:25859265-25859655 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 236
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 69

Conread position: 148-565
Cow position: chr14:447838-448255 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 359

Conread position: 148-566
Cow position: chr14:3080597-3080179 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 148-566
Cow position: chr14:25895867-25896285 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 65

Conread position: 148-574
Cow position: chr14:25836716-25837142 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 259
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 56, 67

Conread position: 148-575
Cow position: chr14:25836380-25836807 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 255
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 67

Conread position: 148-578
Cow position: chr14:447754-448184 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 390

Conread position: 148-578
Cow position: chr14:3061492-3061062 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 148-578
Cow position: chr14:3127857-3127427 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 148-578
Cow position: chr14:25894943-25895373 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 65

Conread position: 148-578
Cow position: chr14:25895027-25895457 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 233

Conread position: 148-588
Cow position: chr14:680556-680997 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 306

Conread position: 149-566
Cow position: chr14:3100839-3100422 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 255
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 150-402
Cow position: chr14:420642-420896 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 166
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 241, 0

Conread position: 150-421
Cow position: chr14:680978-681249 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 181
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 150-443
Cow position: chr14:663404-663111 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-454
Cow position: chr14:25860443-25860747 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 188
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 280, 273

Conread position: 150-454
Cow position: chr14:25877494-25877798 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 185
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 150-496
Cow position: chr14:3100754-3100408 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 214
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 138, 152

Conread position: 150-506
Cow position: chr14:3060986-3060632 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 64

Conread position: 150-510
Cow position: chr14:3127603-3127245 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 334, 0

Conread position: 150-527
Cow position: chr14:3101085-3100713 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 238
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 351, 25

Conread position: 150-544
Cow position: chr14:663487-663095 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 13

Conread position: 150-551
Cow position: chr14:438362-438741 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 272
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 96, 14

Conread position: 150-565
Cow position: chr14:25836466-25836881 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 258
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 316, 295

Conread position: 150-566
Cow position: chr14:680222-680638 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-566
Cow position: chr14:680810-681226 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 40

Conread position: 150-566
Cow position: chr14:3080427-3080011 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-566
Cow position: chr14:25895617-25896033 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 150

Conread position: 150-566
Cow position: chr14:25895953-25896369 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 266
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 212, 216

Conread position: 150-575
Cow position: chr14:433809-434234 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-575
Cow position: chr14:680306-680731 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-575
Cow position: chr14:680390-680815 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-575
Cow position: chr14:680726-681151 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 235

Conread position: 150-575
Cow position: chr14:3061154-3060729 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 319

Conread position: 150-575
Cow position: chr14:3061322-3060897 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 64

Conread position: 150-575
Cow position: chr14:3080259-3079834 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 60

Conread position: 150-575
Cow position: chr14:25836634-25837059 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 276
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 57, 73

Conread position: 150-575
Cow position: chr14:25859351-25859776 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 260
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 57, 67

Conread position: 150-575
Cow position: chr14:25860275-25860700 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 255
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 67

Conread position: 150-575
Cow position: chr14:25877326-25877751 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 261
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 319, 298

Conread position: 150-575
Cow position: chr14:25895281-25895706 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 218

Conread position: 150-575
Cow position: chr14:25895701-25896126 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 275
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 23, 28

Conread position: 150-575
Cow position: chr14:25895785-25896210 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 301

Conread position: 150-576
Cow position: chr14:3080091-3079665 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 55

Conread position: 150-578
Cow position: chr14:447588-448016 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 229

Conread position: 150-578
Cow position: chr14:447672-448100 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 62

Conread position: 150-578
Cow position: chr14:3061406-3060978 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 61

Conread position: 150-578
Cow position: chr14:3080175-3079747 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-578
Cow position: chr14:3080343-3079915 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 306

Conread position: 150-578
Cow position: chr14:3080511-3080083 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 311

Conread position: 150-578
Cow position: chr14:3080847-3080419 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 200

Conread position: 150-578
Cow position: chr14:3100920-3100494 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 267
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 211, 51

Conread position: 150-578
Cow position: chr14:3128023-3127595 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 301

Conread position: 150-578
Cow position: chr14:3155981-3156409 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 61

Conread position: 150-578
Cow position: chr14:25895197-25895625 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 61

Conread position: 150-578
Cow position: chr14:25895365-25895793 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 61

Conread position: 150-578
Cow position: chr14:25895533-25895961 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 28

Conread position: 150-591
Cow position: chr14:3061574-3061132 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 315

Conread position: 150-592
Cow position: chr14:433893-434336 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 39

Conread position: 150-592
Cow position: chr14:3061658-3061215 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 152

Conread position: 150-592
Cow position: chr14:3080679-3080236 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 32

Conread position: 150-592
Cow position: chr14:3127771-3127328 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 430, 0

Conread position: 150-593
Cow position: chr14:3061238-3060794 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 430, 0

Conread position: 150-603
Cow position: chr14:3156065-3156518 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 150-617
Cow position: chr14:433977-434444 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 451, 437

Conread position: 151-578
Cow position: chr14:3080762-3080335 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-421
Cow position: chr14:3100667-3100399 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 153-443
Cow position: chr14:25911001-25911291 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 186
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 55, 62

Conread position: 153-566
Cow position: chr14:3061067-3060654 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-574
Cow position: chr14:3128104-3127683 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 60

Conread position: 153-575
Cow position: chr14:25877161-25877583 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 251
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 53, 60

Conread position: 153-578
Cow position: chr14:680477-680902 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 153-578
Cow position: chr14:25895116-25895541 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 155-574
Cow position: chr14:680647-681066 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 156-575
Cow position: chr14:3080925-3080506 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 45

Conread position: 156-578
Cow position: chr14:3081010-3080587 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 277
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 7, 56

Conread position: 180-595
Cow position: chr14:3061796-3061380 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 400, 0

Conread position: 186-588
Cow position: chr14:3128155-3127752 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 0

Conread position: 210-578
Cow position: chr14:433788-434153 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 214-575
Cow position: chr14:447568-447929 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 245

Conread position: 225-579
Cow position: chr14:25876561-25876915 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 218
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 114, 121

Conread position: 227-578
Cow position: chr14:25894938-25895289 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 229
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 113, 118

Conread position: 227-599
Cow position: chr14:3127610-3127236 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 340, 0

Conread position: 231-575
Cow position: chr14:663490-663147 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 220
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 226, 16

Conread position: 234-575
Cow position: chr14:680222-680563 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 79

Conread position: 247-569
Cow position: chr14:31-356 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 225
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 30

Conread position: 252-578
Cow position: chr14:3128173-3127847 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 215
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 289-575
Cow position: chr14:447559-447845 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 254, 258

Conread position: 309-554
Cow position: chr14:180-425 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 163
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 199, 204

Conread position: 326-575
Cow position: chr14:447512-447761 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 353-606
Cow position: chr14:433761-434013 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 168
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 52, 7

Show alignments to all cow chromosomes.