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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8034M07.5
        

               
Conread position:
               
500-689
               

               
Cow position:
               
chrX:35388101-35387909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
500-788
               

               
Cow position:
               
chrX:31443017-31442738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
500-793
               

               
Cow position:
               
chrX:38935086-38935375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
500-809
               

               
Cow position:
               
chrX:38094721-38094408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
7, 18
               

               
Conread position:
               
501-788
               

               
Cow position:
               
chrX:36060955-36061251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
502-792
               

               
Cow position:
               
chrX:38218516-38218809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
146, 7
               

               
Conread position:
               
503-818
               

               
Cow position:
               
chrX:36067825-36068136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 67
               

               
Conread position:
               
504-719
               

               
Cow position:
               
chrX:48370907-48371113 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
196, 18
               

               
Conread position:
               
504-799
               

               
Cow position:
               
chrX:11073379-11073089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
107, 13
               

               
Conread position:
               
505-788
               

               
Cow position:
               
chrX:5872124-5872408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
104, 12
               

               
Conread position:
               
505-792
               

               
Cow position:
               
chrX:27680212-27680493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
135, 17
               

               
Conread position:
               
505-809
               

               
Cow position:
               
chrX:11717972-11717671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
136, 12
               

               
Conread position:
               
505-839
               

               
Cow position:
               
chrX:6544067-6544396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
130, 12
               

               
Conread position:
               
505-883
               

               
Cow position:
               
chrX:20340080-20339689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
143, 12
               

               
Conread position:
               
506-688
               

               
Cow position:
               
chrX:25419350-25419165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
104, 14
               

               
Conread position:
               
506-690
               

               
Cow position:
               
chrX:40183538-40183349 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-694
               

               
Cow position:
               
chrX:9997522-9997336 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
506-697
               

               
Cow position:
               
chrX:7718666-7718855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
506-697
               

               
Cow position:
               
chrX:40567411-40567604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
104, 14
               

               
Conread position:
               
506-698
               

               
Cow position:
               
chrX:40540332-40540140 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
111, 8
               

               
Conread position:
               
506-699
               

               
Cow position:
               
chrX:7513326-7513513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
506-704
               

               
Cow position:
               
chrX:42086673-42086863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
506-708
               

               
Cow position:
               
chrX:7721796-7721999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
65, 11
               

               
Conread position:
               
506-719
               

               
Cow position:
               
chrX:20582842-20583044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
74, 11
               

               
Conread position:
               
506-730
               

               
Cow position:
               
chrX:30833034-30832819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
506-730
               

               
Cow position:
               
chrX:38439286-38439514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
506-730
               

               
Cow position:
               
chrX:39938711-39938490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-738
               

               
Cow position:
               
chrX:9953953-9954180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-738
               

               
Cow position:
               
chrX:42461934-42461703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
506-739
               

               
Cow position:
               
chrX:35542703-35542937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
506-740
               

               
Cow position:
               
chrX:19015254-19015480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
205, 11
               

               
Conread position:
               
506-740
               

               
Cow position:
               
chrX:34754380-34754149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
506-740
               

               
Cow position:
               
chrX:34990852-34991079 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
136, 11
               

               
Conread position:
               
506-755
               

               
Cow position:
               
chrX:41167153-41166904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-758
               

               
Cow position:
               
chrX:35609798-35610053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-770
               

               
Cow position:
               
chrX:6234637-6234376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-781
               

               
Cow position:
               
chrX:20709883-20710158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
151, 11
               

               
Conread position:
               
506-788
               

               
Cow position:
               
chrX:14599341-14599624 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
506-788
               

               
Cow position:
               
chrX:25035576-25035291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
506-788
               

               
Cow position:
               
chrX:29289388-29289669 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
105, 16
               

               
Conread position:
               
506-788
               

               
Cow position:
               
chrX:33000715-33000996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
123, 9
               

               
Conread position:
               
506-788
               

               
Cow position:
               
chrX:34543599-34543875 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
506-788
               

               
Cow position:
               
chrX:35224111-35224387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
87, 11
               

               
Conread position:
               
506-791
               

               
Cow position:
               
chrX:33493586-33493870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
506-791
               

               
Cow position:
               
chrX:40035633-40035346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
51, 9
               

               
Conread position:
               
506-791
               

               
Cow position:
               
chrX:45174656-45174944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
42, 11
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:9651234-9650929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 8
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:11633490-11633777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
107, 11
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:12980019-12979739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
194, 11
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:14884150-14883861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:17794797-17795076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
178, 11
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:31311837-31312124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:37910264-37910540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
181, 11
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:38006956-38006675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:38642069-38642344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
120, 11
               

               
Conread position:
               
506-792
               

               
Cow position:
               
chrX:45414488-45414209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
142, 11
               

               
Conread position:
               
506-793
               

               
Cow position:
               
chrX:2467691-2467980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-793
               

               
Cow position:
               
chrX:6278694-6278402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
103, 11
               

               
Conread position:
               
506-793
               

               
Cow position:
               
chrX:11844431-11844145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
506-793
               

               
Cow position:
               
chrX:37843532-37843813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-793
               

               
Cow position:
               
chrX:46722929-46722638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-793
               

               
Cow position:
               
chrX:47344106-47344392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
108, 11
               

               
Conread position:
               
506-794
               

               
Cow position:
               
chrX:17725786-17726072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
506-794
               

               
Cow position:
               
chrX:21064098-21064380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
109, 11
               

               
Conread position:
               
506-794
               

               
Cow position:
               
chrX:31949119-31948838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-799
               

               
Cow position:
               
chrX:34502730-34503022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
506-809
               

               
Cow position:
               
chrX:8797059-8797361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
81, 11
               

               
Conread position:
               
506-809
               

               
Cow position:
               
chrX:9201358-9201660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
131, 11
               

               
Conread position:
               
506-809
               

               
Cow position:
               
chrX:10412177-10411874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
123, 11
               

               
Conread position:
               
506-809
               

               
Cow position:
               
chrX:10959589-10959283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
111, 11
               

               
Conread position:
               
506-809
               

               
Cow position:
               
chrX:11655900-11656193 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
157, 11
               

               
Conread position:
               
506-809
               

               
Cow position:
               
chrX:17662785-17662486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
506-809
               

               
Cow position:
               
chrX:27432107-27431806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
506-809
               

               
Cow position:
               
chrX:41884606-41884300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
122, 11
               

               
Conread position:
               
506-809
               

               
Cow position:
               
chrX:42470125-42469829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
190, 11
               

               
Conread position:
               
506-810
               

               
Cow position:
               
chrX:41879123-41878821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 11
               

               
Conread position:
               
506-818
               

               
Cow position:
               
chrX:37781306-37780988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 11
               

               
Conread position:
               
506-824
               

               
Cow position:
               
chrX:34401809-34402129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
328
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
36, 11
               

               
Conread position:
               
506-840
               

               
Cow position:
               
chrX:619196-618859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 11
               

               
Conread position:
               
506-859
               

               
Cow position:
               
chrX:16416318-16416684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
104, 11
               

               
Conread position:
               
506-868
               

               
Cow position:
               
chrX:37574668-37575006 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
506-882
               

               
Cow position:
               
chrX:11939115-11938751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
233, 11
               

               
Conread position:
               
507-828
               

               
Cow position:
               
chrX:39558534-39558216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
122, 14
               

               
Conread position:
               
507-861
               

               
Cow position:
               
chrX:46073008-46072647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
141, 10
               

               
Conread position:
               
508-789
               

               
Cow position:
               
chrX:41526710-41526436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
137, 13
               

               
Conread position:
               
508-801
               

               
Cow position:
               
chrX:40481059-40480766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
108, 9
               

               
Conread position:
               
509-740
               

               
Cow position:
               
chrX:36961450-36961684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
101, 8
               

               
Conread position:
               
509-809
               

               
Cow position:
               
chrX:13647969-13647673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
119, 13
               

               
Conread position:
               
509-809
               

               
Cow position:
               
chrX:30543479-30543172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
11, 104
               

               
Conread position:
               
513-792
               

               
Cow position:
               
chrX:22074616-22074895 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
8, 53
               

               
Conread position:
               
513-793
               

               
Cow position:
               
chrX:23563981-23563695 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
8, 177
               

               
Conread position:
               
513-800
               

               
Cow position:
               
chrX:22482873-22482588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
8, 64
               

               
Conread position:
               
515-694
               

               
Cow position:
               
chrX:19188755-19188937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
95, 71
               

               
Conread position:
               
515-712
               

               
Cow position:
               
chrX:678749-678555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
175, 81
               

               
Conread position:
               
515-755
               

               
Cow position:
               
chrX:45501967-45502204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
219, 114
               

               
Conread position:
               
515-786
               

               
Cow position:
               
chrX:42247365-42247093 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
95, 65
               

               
Conread position:
               
515-787
               

               
Cow position:
               
chrX:29602014-29601738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
114, 65
               

               
Conread position:
               
515-788
               

               
Cow position:
               
chrX:10831678-10831396 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
114, 136
               

               
Conread position:
               
515-792
               

               
Cow position:
               
chrX:13912899-13913170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
175, 51
               

               
Conread position:
               
515-792
               

               
Cow position:
               
chrX:34441633-34441359 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
94, 50
               

               
Conread position:
               
515-792
               

               
Cow position:
               
chrX:37072224-37072484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
515-792
               

               
Cow position:
               
chrX:43730396-43730129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
515-793
               

               
Cow position:
               
chrX:17231553-17231831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
96, 65
               

               
Conread position:
               
515-793
               

               
Cow position:
               
chrX:47873523-47873240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
93, 68
               

               
Conread position:
               
515-809
               

               
Cow position:
               
chrX:31436301-31436586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
134, 41
               

               
Conread position:
               
515-809
               

               
Cow position:
               
chrX:38936519-38936812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
127, 33
               

               
Conread position:
               
515-859
               

               
Cow position:
               
chrX:25337998-25338348 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
110, 138
               

               
Conread position:
               
516-792
               

               
Cow position:
               
chrX:45430197-45429927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
72, 58
               

               
Conread position:
               
516-809
               

               
Cow position:
               
chrX:24424568-24424289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
126, 54
               

               
Conread position:
               
516-832
               

               
Cow position:
               
chrX:45845915-45846236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
113, 225
               

               
Conread position:
               
517-789
               

               
Cow position:
               
chrX:31252238-31252500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
112, 21
               

               
Conread position:
               
517-809
               

               
Cow position:
               
chrX:34376776-34377054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
518-646
               

               
Cow position:
               
chrX:42855230-42855361 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
518-650
               

               
Cow position:
               
chrX:9416871-9416744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
518-719
               

               
Cow position:
               
chrX:4750479-4750281 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
127, 10
               

               
Conread position:
               
518-720
               

               
Cow position:
               
chrX:22812882-22813091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
96, 149
               

               
Conread position:
               
518-725
               

               
Cow position:
               
chrX:35273174-35273385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
518-730
               

               
Cow position:
               
chrX:17908462-17908255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
111, 41
               

               
Conread position:
               
518-736
               

               
Cow position:
               
chrX:42874799-42875022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
97, 188
               

               
Conread position:
               
518-738
               

               
Cow position:
               
chrX:9855122-9855339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
90, 122
               

               
Conread position:
               
518-738
               

               
Cow position:
               
chrX:13382147-13382372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
518-738
               

               
Cow position:
               
chrX:14900900-14900689 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
518-738
               

               
Cow position:
               
chrX:15139723-15139506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
111, 38
               

               
Conread position:
               
518-738
               

               
Cow position:
               
chrX:21593105-21593328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
92, 134
               

               
Conread position:
               
518-738
               

               
Cow position:
               
chrX:42994436-42994654 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
518-761
               

               
Cow position:
               
chrX:26876061-26875817 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
119, 38
               

               
Conread position:
               
518-767
               

               
Cow position:
               
chrX:9425920-9425673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
102, 63
               

               
Conread position:
               
518-773
               

               
Cow position:
               
chrX:11589767-11589512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
518-788
               

               
Cow position:
               
chrX:12309567-12309295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
102, 79
               

               
Conread position:
               
518-788
               

               
Cow position:
               
chrX:21004503-21004775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
119, 62
               

               
Conread position:
               
518-788
               

               
Cow position:
               
chrX:23583380-23583652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
93, 109
               

               
Conread position:
               
518-788
               

               
Cow position:
               
chrX:27174817-27175089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
96, 27
               

               
Conread position:
               
518-788
               

               
Cow position:
               
chrX:29545058-29544786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
93, 29
               

               
Conread position:
               
518-788
               

               
Cow position:
               
chrX:37232231-37232498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
110, 133
               

               
Conread position:
               
518-788
               

               
Cow position:
               
chrX:40809508-40809784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
91, 49
               

               
Conread position:
               
518-788
               

               
Cow position:
               
chrX:42492693-42492432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 44
               

               
Conread position:
               
518-788
               

               
Cow position:
               
chrX:45404012-45403734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
92, 0
               

               
Conread position:
               
518-789
               

               
Cow position:
               
chrX:24288111-24287841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
66, 102
               

               
Conread position:
               
518-790
               

               
Cow position:
               
chrX:17541785-17542055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
172, 69
               

               
Conread position:
               
518-791
               

               
Cow position:
               
chrX:19690039-19690309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
142, 134
               

               
Conread position:
               
518-791
               

               
Cow position:
               
chrX:45110477-45110750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
111, 80
               

               
Conread position:
               
518-792
               

               
Cow position:
               
chrX:8869587-8869307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
20, 100
               

               
Conread position:
               
518-792
               

               
Cow position:
               
chrX:18695098-18694836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
111, 48
               

               
Conread position:
               
518-793
               

               
Cow position:
               
chrX:1055568-1055285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
93, 44
               

               
Conread position:
               
518-793
               

               
Cow position:
               
chrX:3579766-3580040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
518-793
               

               
Cow position:
               
chrX:36975771-36976047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
518-799
               

               
Cow position:
               
chrX:32623404-32623673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
134, 0
               

               
Conread position:
               
518-804
               

               
Cow position:
               
chrX:917550-917261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
46, 136
               

               
Conread position:
               
518-804
               

               
Cow position:
               
chrX:26625855-26625564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
69, 130
               

               
Conread position:
               
518-806
               

               
Cow position:
               
chrX:7646082-7646360 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
518-809
               

               
Cow position:
               
chrX:1616226-1615931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
129, 231
               

               
Conread position:
               
518-809
               

               
Cow position:
               
chrX:15007329-15007037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
98, 24
               

               
Conread position:
               
518-809
               

               
Cow position:
               
chrX:23091703-23091983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
170, 49
               

               
Conread position:
               
518-809
               

               
Cow position:
               
chrX:23514197-23513905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 31
               

               
Conread position:
               
518-809
               

               
Cow position:
               
chrX:23785475-23785758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
113, 98
               

               
Conread position:
               
518-809
               

               
Cow position:
               
chrX:27394192-27393914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
139, 44
               

               
Conread position:
               
518-809
               

               
Cow position:
               
chrX:33855411-33855108 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
130, 60
               

               
Conread position:
               
518-820
               

               
Cow position:
               
chrX:13177643-13177353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
129, 46
               

               
Conread position:
               
518-831
               

               
Cow position:
               
chrX:1176161-1175850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
134, 162
               

               
Conread position:
               
518-832
               

               
Cow position:
               
chrX:38853018-38853334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
127, 51
               

               
Conread position:
               
518-837
               

               
Cow position:
               
chrX:7508961-7509278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
117, 10
               

               
Conread position:
               
518-840
               

               
Cow position:
               
chrX:34532350-34532668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
130, 38
               

               
Conread position:
               
518-883
               

               
Cow position:
               
chrX:8925527-8925886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
111, 45
               

               
Conread position:
               
518-883
               

               
Cow position:
               
chrX:29542397-29542022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
5.04467e-44
               

               
Alignm gaps (pig, cow):
               
129, 38
               

               
Conread position:
               
519-678
               

               
Cow position:
               
chrX:21663131-21663287 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 113
               

               
Conread position:
               
519-720
               

               
Cow position:
               
chrX:23497842-23497644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
110, 47
               

               
Conread position:
               
519-761
               

               
Cow position:
               
chrX:34192499-34192734 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
129, 29
               

               
Conread position:
               
519-788
               

               
Cow position:
               
chrX:11856251-11856521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
91, 48
               

               
Conread position:
               
519-788
               

               
Cow position:
               
chrX:42171477-42171203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
110, 132
               

               
Conread position:
               
519-793
               

               
Cow position:
               
chrX:8730902-8731189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
62, 251
               

               
Conread position:
               
519-793
               

               
Cow position:
               
chrX:48010417-48010700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
519-809
               

               
Cow position:
               
chrX:4044028-4043755 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
519-883
               

               
Cow position:
               
chrX:754781-755149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
92, 136
               

               
Conread position:
               
520-749
               

               
Cow position:
               
chrX:40647801-40648038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
520-771
               

               
Cow position:
               
chrX:48044376-48044125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 139
               

               
Conread position:
               
520-787
               

               
Cow position:
               
chrX:47303056-47302787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
92, 130
               

               
Conread position:
               
520-793
               

               
Cow position:
               
chrX:47301080-47300807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
92, 42
               

               
Conread position:
               
521-696
               

               
Cow position:
               
chrX:11806192-11806013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
116, 0
               

               
Conread position:
               
521-709
               

               
Cow position:
               
chrX:23571975-23571785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 167
               

               
Conread position:
               
521-709
               

               
Cow position:
               
chrX:40544783-40544594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
90, 134
               

               
Conread position:
               
521-711
               

               
Cow position:
               
chrX:40452388-40452195 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
108, 188
               

               
Conread position:
               
521-738
               

               
Cow position:
               
chrX:14221904-14222117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 128
               

               
Conread position:
               
521-787
               

               
Cow position:
               
chrX:18651220-18650951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
108, 159
               

               
Conread position:
               
521-788
               

               
Cow position:
               
chrX:4279290-4279027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
90, 111
               

               
Conread position:
               
521-788
               

               
Cow position:
               
chrX:18485619-18485894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
90, 180
               

               
Conread position:
               
521-788
               

               
Cow position:
               
chrX:21672376-21672651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
90, 134
               

               
Conread position:
               
521-788
               

               
Cow position:
               
chrX:26492827-26493097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
90, 173
               

               
Conread position:
               
521-809
               

               
Cow position:
               
chrX:34411665-34411958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
116, 74
               

               
Conread position:
               
521-860
               

               
Cow position:
               
chrX:32309930-32310269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
174, 106
               

               
Conread position:
               
521-883
               

               
Cow position:
               
chrX:42011104-42011467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
114, 91
               

               
Conread position:
               
523-792
               

               
Cow position:
               
chrX:22624307-22624571 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
175, 92
               

               
Conread position:
               
524-773
               

               
Cow position:
               
chrX:27772133-27771890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
133, 43
               

               
Conread position:
               
524-787
               

               
Cow position:
               
chrX:7053908-7053646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
86, 171
               

               
Conread position:
               
524-788
               

               
Cow position:
               
chrX:6407376-6407634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
172, 61
               

               
Conread position:
               
525-738
               

               
Cow position:
               
chrX:4398954-4399166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
163, 137
               

               
Conread position:
               
525-883
               

               
Cow position:
               
chrX:34792482-34792117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
110, 61
               

               
Conread position:
               
526-793
               

               
Cow position:
               
chrX:22921143-22921417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
84, 18
               

               
Conread position:
               
527-795
               

               
Cow position:
               
chrX:40269315-40269590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
105, 124
               

               
Conread position:
               
530-697
               

               
Cow position:
               
chrX:14003811-14003640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
531-809
               

               
Cow position:
               
chrX:14275901-14275631 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
532-783
               

               
Cow position:
               
chrX:5638330-5638083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
117, 50
               

               
Conread position:
               
546-809
               

               
Cow position:
               
chrX:5118656-5118386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
101, 120
               

               
Conread position:
               
547-792
               

               
Cow position:
               
chrX:616416-616164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
11, 160
               

               
Conread position:
               
548-880
               

               
Cow position:
               
chrX:20584170-20584512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
346
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
25, 105
               

               
Conread position:
               
553-834
               

               
Cow position:
               
chrX:38066597-38066317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
141, 76
               

               
Conread position:
               
555-792
               

               
Cow position:
               
chrX:29680405-29680166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
74, 154
               

               
Conread position:
               
555-865
               

               
Cow position:
               
chrX:21986437-21986114 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
326
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
68, 96
               

               
Conread position:
               
556-761
               

               
Cow position:
               
chrX:13785507-13785296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
556-792
               

               
Cow position:
               
chrX:5919352-5919587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
134, 82
               

               
Conread position:
               
556-809
               

               
Cow position:
               
chrX:34313889-34314136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
92, 39
               

               
Conread position:
               
556-809
               

               
Cow position:
               
chrX:40557825-40557567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
93, 73
               

               
Conread position:
               
563-788
               

               
Cow position:
               
chrX:41027020-41027250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
85, 49
               

               
Conread position:
               
563-809
               

               
Cow position:
               
chrX:878513-878268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
7, 22
               

               
Conread position:
               
565-788
               

               
Cow position:
               
chrX:15814952-15815175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
83, 136
               

               
Conread position:
               
565-807
               

               
Cow position:
               
chrX:37986098-37986335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
123, 64
               

               
Conread position:
               
567-809
               

               
Cow position:
               
chrX:7695615-7695861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
53, 72
               

               
Conread position:
               
568-822
               

               
Cow position:
               
chrX:40685463-40685203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
66, 0
               

               
Conread position:
               
569-809
               

               
Cow position:
               
chrX:34505178-34504936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
116, 137
               

               
Conread position:
               
584-792
               

               
Cow position:
               
chrX:26881684-26881470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
590-799
               

               
Cow position:
               
chrX:42927929-42927722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
57, 97
               

               
Conread position:
               
598-883
               

               
Cow position:
               
chrX:34837156-34836866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
59, 41
               

               
Conread position:
               
608-809
               

               
Cow position:
               
chrX:1466069-1466274 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
609-883
               

               
Cow position:
               
chrX:29050156-29050448 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
40, 29
               

               
Conread position:
               
635-809
               

               
Cow position:
               
chrX:46429881-46429707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
56, 17
               
Show alignments to all cow chromosomes.