Cow genome map


           Conread name:
           Ss1.1-Pig4-TMW8035D07.3
        

               Conread position:
               624-972
               

               Cow position:
               chrX:23969396-23969742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 40
               

               Conread position:
               632-969
               

               Cow position:
               chrX:29877009-29876669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               344
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 152
               

               Conread position:
               639-865
               

               Cow position:
               chrX:45374048-45373824 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               171
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               47, 26
               

               Conread position:
               645-972
               

               Cow position:
               chrX:40268545-40268867 (view UCSC Genome Browser custom track)
               

               Alignm length:
               335
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               107, 18
               

               Conread position:
               646-961
               

               Cow position:
               chrX:2524667-2524343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               327
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 11
               

               Conread position:
               653-865
               

               Cow position:
               chrX:13414731-13414522 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               157
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               103, 22
               

               Conread position:
               655-972
               

               Cow position:
               chrX:7277033-7277325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               233
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               155, 8
               

               Conread position:
               656-961
               

               Cow position:
               chrX:30165585-30165291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 14
               

               Conread position:
               656-965
               

               Cow position:
               chrX:1550042-1550349 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 9
               

               Conread position:
               656-966
               

               Cow position:
               chrX:24292586-24292294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 9
               

               Conread position:
               656-972
               

               Cow position:
               chrX:23572740-23572425 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               106, 9
               

               Conread position:
               656-972
               

               Cow position:
               chrX:38330461-38330773 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               657-972
               

               Cow position:
               chrX:35388832-35388516 (view UCSC Genome Browser custom track)
               

               Alignm length:
               329
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               99, 34
               

               Conread position:
               660-969
               

               Cow position:
               chrX:20503719-20504034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               317
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 63
               

               Conread position:
               660-972
               

               Cow position:
               chrX:39293140-39292827 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               102, 0
               

               Conread position:
               662-961
               

               Cow position:
               chrX:7805461-7805757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 122
               

               Conread position:
               662-972
               

               Cow position:
               chrX:44193356-44193049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 40
               

               Conread position:
               663-855
               

               Cow position:
               chrX:20792223-20792410 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               97, 0
               

               Conread position:
               663-878
               

               Cow position:
               chrX:4406964-4407181 (view UCSC Genome Browser custom track)
               

               Alignm length:
               218
               

               Alignm identity:
               176
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               663-893
               

               Cow position:
               chrX:41885097-41884878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               183
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               93, 130
               

               Conread position:
               663-905
               

               Cow position:
               chrX:1617153-1616908 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               189
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               663-921
               

               Cow position:
               chrX:35287507-35287779 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 113
               

               Conread position:
               663-926
               

               Cow position:
               chrX:38218057-38218329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               205
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 232
               

               Conread position:
               663-932
               

               Cow position:
               chrX:39352537-39352286 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               205
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               90, 62
               

               Conread position:
               663-939
               

               Cow position:
               chrX:620183-619901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               663-952
               

               Cow position:
               chrX:37117990-37118270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 206
               

               Conread position:
               663-957
               

               Cow position:
               chrX:13178526-13178231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 43
               

               Conread position:
               663-962
               

               Cow position:
               chrX:47000572-47000272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 17
               

               Conread position:
               663-965
               

               Cow position:
               chrX:10412894-10412589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 175
               

               Conread position:
               663-965
               

               Cow position:
               chrX:39559272-39558982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 0
               

               Conread position:
               663-968
               

               Cow position:
               chrX:24109523-24109220 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 178
               

               Conread position:
               663-969
               

               Cow position:
               chrX:44901225-44901532 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 13
               

               Conread position:
               663-972
               

               Cow position:
               chrX:2008617-2008319 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               663-972
               

               Cow position:
               chrX:4751281-4750981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 0
               

               Conread position:
               663-972
               

               Cow position:
               chrX:4995692-4996006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               316
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 29
               

               Conread position:
               663-972
               

               Cow position:
               chrX:6543346-6543656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               203, 52
               

               Conread position:
               663-972
               

               Cow position:
               chrX:16325448-16325138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 67
               

               Conread position:
               663-972
               

               Cow position:
               chrX:31372543-31372853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 174
               

               Conread position:
               663-972
               

               Cow position:
               chrX:39939672-39939363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 239
               

               Conread position:
               664-863
               

               Cow position:
               chrX:17793937-17794134 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               153
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               107, 27
               

               Conread position:
               664-889
               

               Cow position:
               chrX:33537662-33537886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               180
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               92, 80
               

               Conread position:
               664-965
               

               Cow position:
               chrX:31261551-31261250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 144
               

               Conread position:
               664-967
               

               Cow position:
               chrX:17158727-17158432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               215
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               95, 28
               

               Conread position:
               665-831
               

               Cow position:
               chrX:40184156-40184323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               665-861
               

               Cow position:
               chrX:3155500-3155305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               49, 96
               

               Conread position:
               665-864
               

               Cow position:
               chrX:3144712-3144911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               149
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               88, 163
               

               Conread position:
               665-865
               

               Cow position:
               chrX:20790457-20790256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               141
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               86, 188
               

               Conread position:
               665-893
               

               Cow position:
               chrX:8400467-8400252 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               159
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               665-895
               

               Cow position:
               chrX:21626616-21626380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               87, 36
               

               Conread position:
               665-912
               

               Cow position:
               chrX:150555-150801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               193
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 79
               

               Conread position:
               665-919
               

               Cow position:
               chrX:3582018-3582285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               64, 56
               

               Conread position:
               665-934
               

               Cow position:
               chrX:34993263-34993539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               87, 60
               

               Conread position:
               665-962
               

               Cow position:
               chrX:21063556-21063852 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 120
               

               Conread position:
               665-962
               

               Cow position:
               chrX:31728551-31728844 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               196, 88
               

               Conread position:
               665-962
               

               Cow position:
               chrX:41734102-41733810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 56
               

               Conread position:
               665-965
               

               Cow position:
               chrX:10301211-10301506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 147
               

               Conread position:
               665-966
               

               Cow position:
               chrX:1056304-1056003 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 214
               

               Conread position:
               665-966
               

               Cow position:
               chrX:2299969-2300265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 37
               

               Conread position:
               665-967
               

               Cow position:
               chrX:24006741-24006443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               212
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               97, 12
               

               Conread position:
               665-969
               

               Cow position:
               chrX:5841397-5841685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               218
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               199, 42
               

               Conread position:
               665-969
               

               Cow position:
               chrX:6766651-6766353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 27
               

               Conread position:
               665-969
               

               Cow position:
               chrX:11074100-11073820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               223
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               265, 40
               

               Conread position:
               665-969
               

               Cow position:
               chrX:19929517-19929823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               248
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 204
               

               Conread position:
               665-972
               

               Cow position:
               chrX:3211453-3211154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 80
               

               Conread position:
               665-972
               

               Cow position:
               chrX:6044377-6044098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               88, 117
               

               Conread position:
               665-972
               

               Cow position:
               chrX:10440744-10440443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               218
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               14, 204
               

               Conread position:
               665-972
               

               Cow position:
               chrX:11744351-11744659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 37
               

               Conread position:
               665-972
               

               Cow position:
               chrX:20800872-20801164 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               227
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               54, 86
               

               Conread position:
               665-972
               

               Cow position:
               chrX:20999186-20998885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 58
               

               Conread position:
               665-972
               

               Cow position:
               chrX:29700860-29700562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 139
               

               Conread position:
               665-972
               

               Cow position:
               chrX:37832376-37832082 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 37
               

               Conread position:
               665-972
               

               Cow position:
               chrX:38852244-38852550 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 176
               

               Conread position:
               665-972
               

               Cow position:
               chrX:40365662-40365352 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 0
               

               Conread position:
               666-754
               

               Cow position:
               chrX:47247170-47247258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               89
               

               Alignm identity:
               77
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               666-801
               

               Cow position:
               chrX:11819587-11819452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               103
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               89, 25
               

               Conread position:
               666-801
               

               Cow position:
               chrX:42466910-42466774 (view UCSC Genome Browser custom track)
               

               Alignm length:
               137
               

               Alignm identity:
               109
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               666-847
               

               Cow position:
               chrX:6201614-6201792 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               137
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               143, 100
               

               Conread position:
               666-865
               

               Cow position:
               chrX:24316906-24317106 (view UCSC Genome Browser custom track)
               

               Alignm length:
               203
               

               Alignm identity:
               162
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               33, 112
               

               Conread position:
               666-873
               

               Cow position:
               chrX:45400935-45400723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               162
               

               Alignm E-value:
               9e-38
               

               Alignm gaps (pig, cow):
               90, 68
               

               Conread position:
               666-903
               

               Cow position:
               chrX:8144794-8144563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               666-941
               

               Cow position:
               chrX:17891630-17891907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 0
               

               Conread position:
               666-953
               

               Cow position:
               chrX:35937991-35937709 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 40
               

               Conread position:
               666-962
               

               Cow position:
               chrX:2382551-2382848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 188
               

               Conread position:
               666-963
               

               Cow position:
               chrX:35609065-35609370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 36
               

               Conread position:
               666-965
               

               Cow position:
               chrX:16021291-16020998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 25
               

               Conread position:
               666-967
               

               Cow position:
               chrX:36839797-36840088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 37
               

               Conread position:
               666-969
               

               Cow position:
               chrX:6279519-6279215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 149
               

               Conread position:
               666-969
               

               Cow position:
               chrX:17663832-17663531 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 146
               

               Conread position:
               666-972
               

               Cow position:
               chrX:865480-865787 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               666-972
               

               Cow position:
               chrX:3406259-3405962 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 209
               

               Conread position:
               666-972
               

               Cow position:
               chrX:3649735-3649432 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               37, 0
               

               Conread position:
               666-972
               

               Cow position:
               chrX:4482049-4482344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 24
               

               Conread position:
               666-972
               

               Cow position:
               chrX:6372264-6372572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               666-972
               

               Cow position:
               chrX:9642348-9642041 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               666-972
               

               Cow position:
               chrX:23280108-23280400 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 168
               

               Conread position:
               666-972
               

               Cow position:
               chrX:27305013-27305320 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               666-972
               

               Cow position:
               chrX:28503420-28503727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               666-972
               

               Cow position:
               chrX:35024149-35024446 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               90, 71
               

               Conread position:
               666-972
               

               Cow position:
               chrX:37852220-37852530 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               666-972
               

               Cow position:
               chrX:39185257-39185564 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               666-972
               

               Cow position:
               chrX:39560575-39560261 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 0
               

               Conread position:
               666-972
               

               Cow position:
               chrX:40693649-40693330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               321
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 262
               

               Conread position:
               666-972
               

               Cow position:
               chrX:41305140-41304840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 24
               

               Conread position:
               666-972
               

               Cow position:
               chrX:41791632-41791321 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               667-790
               

               Cow position:
               chrX:5375192-5375068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               125
               

               Alignm identity:
               97
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               667-801
               

               Cow position:
               chrX:3827752-3827887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               102
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               667-805
               

               Cow position:
               chrX:16803782-16803643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               140
               

               Alignm identity:
               106
               

               Alignm E-value:
               6e-24
               

               Alignm gaps (pig, cow):
               88, 0
               

               Conread position:
               667-812
               

               Cow position:
               chrX:27497914-27498060 (view UCSC Genome Browser custom track)
               

               Alignm length:
               147
               

               Alignm identity:
               116
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               667-829
               

               Cow position:
               chrX:20580378-20580540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               165
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               88, 119
               

               Conread position:
               667-830
               

               Cow position:
               chrX:45042513-45042679 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               667-836
               

               Cow position:
               chrX:9095728-9095897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               88, 108
               

               Conread position:
               667-842
               

               Cow position:
               chrX:43074968-43075144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               86, 0
               

               Conread position:
               667-847
               

               Cow position:
               chrX:15122076-15121896 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               93, 175
               

               Conread position:
               667-848
               

               Cow position:
               chrX:34094791-34094973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               141
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-849
               

               Cow position:
               chrX:15175466-15175284 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               138
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               100, 76
               

               Conread position:
               667-855
               

               Cow position:
               chrX:22493116-22493304 (view UCSC Genome Browser custom track)
               

               Alignm length:
               190
               

               Alignm identity:
               137
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               88, 158
               

               Conread position:
               667-886
               

               Cow position:
               chrX:6235765-6235551 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               160
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               30, 0
               

               Conread position:
               667-892
               

               Cow position:
               chrX:28606000-28605785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               168
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               92, 31
               

               Conread position:
               667-936
               

               Cow position:
               chrX:26230673-26230403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-945
               

               Cow position:
               chrX:23317324-23317048 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 22
               

               Conread position:
               667-950
               

               Cow position:
               chrX:29099502-29099785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 226
               

               Conread position:
               667-955
               

               Cow position:
               chrX:29083152-29083441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-959
               

               Cow position:
               chrX:32064083-32063793 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               86, 152
               

               Conread position:
               667-961
               

               Cow position:
               chrX:28866927-28866637 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 231
               

               Conread position:
               667-962
               

               Cow position:
               chrX:29916261-29915965 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 159
               

               Conread position:
               667-962
               

               Cow position:
               chrX:35239957-35240247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 149
               

               Conread position:
               667-962
               

               Cow position:
               chrX:37134548-37134256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 215
               

               Conread position:
               667-964
               

               Cow position:
               chrX:23387453-23387155 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-964
               

               Cow position:
               chrX:23395692-23395990 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-965
               

               Cow position:
               chrX:30059972-30060272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 208
               

               Conread position:
               667-967
               

               Cow position:
               chrX:24413112-24413416 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               667-968
               

               Cow position:
               chrX:11499691-11499396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 254
               

               Conread position:
               667-968
               

               Cow position:
               chrX:26275224-26275525 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 74
               

               Conread position:
               667-968
               

               Cow position:
               chrX:40560455-40560158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               198, 215
               

               Conread position:
               667-969
               

               Cow position:
               chrX:2559875-2559572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-969
               

               Cow position:
               chrX:7096544-7096846 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 30
               

               Conread position:
               667-969
               

               Cow position:
               chrX:10059550-10059853 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-969
               

               Cow position:
               chrX:15621446-15621144 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 111
               

               Conread position:
               667-969
               

               Cow position:
               chrX:16711041-16711344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               667-969
               

               Cow position:
               chrX:16808729-16808426 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-969
               

               Cow position:
               chrX:22564598-22564299 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 65
               

               Conread position:
               667-969
               

               Cow position:
               chrX:22887747-22888046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 42
               

               Conread position:
               667-969
               

               Cow position:
               chrX:24310015-24309720 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               210
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               85, 135
               

               Conread position:
               667-969
               

               Cow position:
               chrX:29880195-29879892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               667-969
               

               Cow position:
               chrX:32145170-32144880 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:322999-323306 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:671908-671612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 209
               

               Conread position:
               667-972
               

               Cow position:
               chrX:2159850-2160156 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:2500545-2500240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 123
               

               Conread position:
               667-972
               

               Cow position:
               chrX:2649264-2648970 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               215
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               20, 13
               

               Conread position:
               667-972
               

               Cow position:
               chrX:3360906-3361212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:3464991-3464685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               214, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:4622868-4622563 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 215
               

               Conread position:
               667-972
               

               Cow position:
               chrX:4905902-4905599 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 105
               

               Conread position:
               667-972
               

               Cow position:
               chrX:5124274-5123968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:5354217-5353912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 66
               

               Conread position:
               667-972
               

               Cow position:
               chrX:5392490-5392184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:6453782-6454088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:6870479-6870172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:7551716-7551412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 278
               

               Conread position:
               667-972
               

               Cow position:
               chrX:7572476-7572772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 122
               

               Conread position:
               667-972
               

               Cow position:
               chrX:7754991-7755292 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 108
               

               Conread position:
               667-972
               

               Cow position:
               chrX:8435117-8434812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 145
               

               Conread position:
               667-972
               

               Cow position:
               chrX:8482532-8482830 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 181
               

               Conread position:
               667-972
               

               Cow position:
               chrX:8590666-8590973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 202
               

               Conread position:
               667-972
               

               Cow position:
               chrX:9011416-9011718 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 149
               

               Conread position:
               667-972
               

               Cow position:
               chrX:9169520-9169223 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 47
               

               Conread position:
               667-972
               

               Cow position:
               chrX:10445330-10445024 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:10528701-10528383 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 67
               

               Conread position:
               667-972
               

               Cow position:
               chrX:11950401-11950098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 256
               

               Conread position:
               667-972
               

               Cow position:
               chrX:12178759-12179070 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:12289810-12290129 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 36
               

               Conread position:
               667-972
               

               Cow position:
               chrX:12345981-12346287 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:14125159-14124855 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 148
               

               Conread position:
               667-972
               

               Cow position:
               chrX:14462399-14462700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 120
               

               Conread position:
               667-972
               

               Cow position:
               chrX:14597931-14598237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:14801734-14801427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 161
               

               Conread position:
               667-972
               

               Cow position:
               chrX:15113757-15114062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 215
               

               Conread position:
               667-972
               

               Cow position:
               chrX:15260534-15260228 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:16046232-16046538 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:16278741-16279043 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 35
               

               Conread position:
               667-972
               

               Cow position:
               chrX:16359922-16359618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 216
               

               Conread position:
               667-972
               

               Cow position:
               chrX:16782365-16782671 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:17054653-17054960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:17782585-17782890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 284
               

               Conread position:
               667-972
               

               Cow position:
               chrX:18193775-18194081 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:18222500-18222804 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 14
               

               Conread position:
               667-972
               

               Cow position:
               chrX:18488629-18488323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:18656720-18656414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:18898564-18898258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               245
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:18950651-18950345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:20953618-20953924 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:21343480-21343785 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 279
               

               Conread position:
               667-972
               

               Cow position:
               chrX:21685704-21686010 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:21793675-21793982 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:22077257-22076951 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:22810975-22811280 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 284
               

               Conread position:
               667-972
               

               Cow position:
               chrX:22869904-22870213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:23038899-23038606 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 58
               

               Conread position:
               667-972
               

               Cow position:
               chrX:23986335-23986641 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:24280005-24280294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 180
               

               Conread position:
               667-972
               

               Cow position:
               chrX:24442154-24441848 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:24588649-24588345 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:24769771-24769466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 111
               

               Conread position:
               667-972
               

               Cow position:
               chrX:25282409-25282102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:25289594-25289288 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:25451423-25451715 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 47
               

               Conread position:
               667-972
               

               Cow position:
               chrX:26531058-26531356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 236
               

               Conread position:
               667-972
               

               Cow position:
               chrX:26755556-26755238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               324
               

               Alignm identity:
               231
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               94, 58
               

               Conread position:
               667-972
               

               Cow position:
               chrX:26760483-26760177 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:27095215-27095510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 24
               

               Conread position:
               667-972
               

               Cow position:
               chrX:27423197-27422893 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 39
               

               Conread position:
               667-972
               

               Cow position:
               chrX:27615897-27616194 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 137
               

               Conread position:
               667-972
               

               Cow position:
               chrX:27628938-27629241 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 204
               

               Conread position:
               667-972
               

               Cow position:
               chrX:27754513-27754820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 173
               

               Conread position:
               667-972
               

               Cow position:
               chrX:28518635-28518329 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:28588055-28588362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:28753251-28752949 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 149
               

               Conread position:
               667-972
               

               Cow position:
               chrX:29759773-29760078 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 203
               

               Conread position:
               667-972
               

               Cow position:
               chrX:29842093-29841778 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               667-972
               

               Cow position:
               chrX:29908117-29907811 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:29912424-29912730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:30159906-30159604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 142
               

               Conread position:
               667-972
               

               Cow position:
               chrX:30196383-30196688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               98, 167
               

               Conread position:
               667-972
               

               Cow position:
               chrX:34761151-34761457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:35532940-35533245 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 63
               

               Conread position:
               667-972
               

               Cow position:
               chrX:36729469-36729775 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:37404144-37403845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 24
               

               Conread position:
               667-972
               

               Cow position:
               chrX:38150773-38151079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               242
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:38231182-38230876 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 112
               

               Conread position:
               667-972
               

               Cow position:
               chrX:38961765-38961455 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:39713636-39713942 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:40384141-40384437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               64, 30
               

               Conread position:
               667-972
               

               Cow position:
               chrX:40601214-40601510 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               212
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               64, 30
               

               Conread position:
               667-972
               

               Cow position:
               chrX:41156396-41156702 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:41847444-41847143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 22
               

               Conread position:
               667-972
               

               Cow position:
               chrX:44053901-44054197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               19, 74
               

               Conread position:
               667-972
               

               Cow position:
               chrX:45236551-45236857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 0
               

               Conread position:
               667-972
               

               Cow position:
               chrX:46296747-46297051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 42
               

               Conread position:
               668-868
               

               Cow position:
               chrX:27070932-27071131 (view UCSC Genome Browser custom track)
               

               Alignm length:
               202
               

               Alignm identity:
               147
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               85, 62
               

               Conread position:
               668-932
               

               Cow position:
               chrX:25573438-25573695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               87, 136
               

               Conread position:
               668-962
               

               Cow position:
               chrX:36691919-36692215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               162, 77
               

               Conread position:
               668-967
               

               Cow position:
               chrX:29892173-29892472 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               93, 214
               

               Conread position:
               668-969
               

               Cow position:
               chrX:2579505-2579807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               668-972
               

               Cow position:
               chrX:2048198-2048503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               668-972
               

               Cow position:
               chrX:3082044-3081740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 57
               

               Conread position:
               668-972
               

               Cow position:
               chrX:5248471-5248776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 135
               

               Conread position:
               668-972
               

               Cow position:
               chrX:5866232-5866537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               668-972
               

               Cow position:
               chrX:16087037-16086732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               668-972
               

               Cow position:
               chrX:16525876-16526180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 290
               

               Conread position:
               668-972
               

               Cow position:
               chrX:16702757-16703062 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               668-972
               

               Cow position:
               chrX:21254865-21255166 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 200
               

               Conread position:
               668-972
               

               Cow position:
               chrX:23134675-23134969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 108
               

               Conread position:
               668-972
               

               Cow position:
               chrX:23341905-23341601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 200
               

               Conread position:
               668-972
               

               Cow position:
               chrX:24174866-24174561 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 38
               

               Conread position:
               668-972
               

               Cow position:
               chrX:27977746-27977440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 23
               

               Conread position:
               668-972
               

               Cow position:
               chrX:31978755-31978450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               668-972
               

               Cow position:
               chrX:39548485-39548790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               94, 0
               

               Conread position:
               669-848
               

               Cow position:
               chrX:4326594-4326415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               93, 66
               

               Conread position:
               669-865
               

               Cow position:
               chrX:33814404-33814206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               150
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               60, 11
               

               Conread position:
               669-967
               

               Cow position:
               chrX:24889038-24888753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               199
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               93, 34
               

               Conread position:
               669-968
               

               Cow position:
               chrX:13069655-13069357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               87, 40
               

               Conread position:
               669-968
               

               Cow position:
               chrX:13090216-13089918 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               87, 40
               

               Conread position:
               669-969
               

               Cow position:
               chrX:38793450-38793737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               193
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               84, 0
               

               Conread position:
               669-972
               

               Cow position:
               chrX:15306782-15306482 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               211
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               89, 48
               

               Conread position:
               669-972
               

               Cow position:
               chrX:17610368-17610068 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               89, 160
               

               Conread position:
               669-972
               

               Cow position:
               chrX:20363057-20362759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               222
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               87, 179
               

               Conread position:
               669-972
               

               Cow position:
               chrX:28523574-28523275 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               89, 32
               

               Conread position:
               669-972
               

               Cow position:
               chrX:30086215-30085916 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 92
               

               Conread position:
               669-972
               

               Cow position:
               chrX:30681417-30681113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               87, 115
               

               Conread position:
               670-803
               

               Cow position:
               chrX:14602287-14602154 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               104
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               83, 58
               

               Conread position:
               670-928
               

               Cow position:
               chrX:39903407-39903158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               184
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               13, 44
               

               Conread position:
               670-933
               

               Cow position:
               chrX:41527426-41527163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               86, 199
               

               Conread position:
               670-967
               

               Cow position:
               chrX:4498722-4499017 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               12, 60
               

               Conread position:
               670-969
               

               Cow position:
               chrX:25146651-25146941 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               39, 60
               

               Conread position:
               670-972
               

               Cow position:
               chrX:2486545-2486239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               670-972
               

               Cow position:
               chrX:5320629-5320327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 60
               

               Conread position:
               670-972
               

               Cow position:
               chrX:31495824-31496127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 45
               

               Conread position:
               670-972
               

               Cow position:
               chrX:32584843-32584540 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 0
               

               Conread position:
               670-972
               

               Cow position:
               chrX:36535644-36535344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               6, 146
               

               Conread position:
               671-862
               

               Cow position:
               chrX:2466222-2466034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               671-954
               

               Cow position:
               chrX:3246070-3245794 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               192
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               38, 0
               

               Conread position:
               671-972
               

               Cow position:
               chrX:13430698-13430404 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               216
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               85, 9
               

               Conread position:
               672-941
               

               Cow position:
               chrX:22125765-22125495 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 73
               

               Conread position:
               672-941
               

               Cow position:
               chrX:31379047-31379315 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               188
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               109, 197
               

               Conread position:
               672-967
               

               Cow position:
               chrX:23314712-23314427 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               204
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               252, 31
               

               Conread position:
               672-967
               

               Cow position:
               chrX:25405282-25404976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               85, 254
               

               Conread position:
               672-967
               

               Cow position:
               chrX:30113156-30113444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               201
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               177, 33
               

               Conread position:
               672-968
               

               Cow position:
               chrX:4408647-4408948 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               215
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               67, 156
               

               Conread position:
               672-968
               

               Cow position:
               chrX:23218164-23218454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               208
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               242, 53
               

               Conread position:
               672-969
               

               Cow position:
               chrX:3121807-3121508 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               200
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               91, 169
               

               Conread position:
               672-969
               

               Cow position:
               chrX:5667944-5667650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               90, 64
               

               Conread position:
               672-972
               

               Cow position:
               chrX:509053-508760 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               215
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               90, 49
               

               Conread position:
               672-972
               

               Cow position:
               chrX:33803904-33803614 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 8
               

               Conread position:
               672-972
               

               Cow position:
               chrX:39463956-39463649 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-37
               

               Alignm gaps (pig, cow):
               80, 20
               

               Conread position:
               673-972
               

               Cow position:
               chrX:18247450-18247740 (view UCSC Genome Browser custom track)
               

               Alignm length:
               300
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               673-972
               

               Cow position:
               chrX:19877908-19878207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               219
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               43, 58
               

               Conread position:
               675-938
               

               Cow position:
               chrX:24170219-24169960 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               87, 5
               

               Conread position:
               675-967
               

               Cow position:
               chrX:23974338-23974057 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               202
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               676-972
               

               Cow position:
               chrX:13912187-13912487 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 140
               

               Conread position:
               676-972
               

               Cow position:
               chrX:24826108-24826395 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               214
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               53, 6
               

               Conread position:
               676-972
               

               Cow position:
               chrX:27450955-27450669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 199
               

               Conread position:
               676-972
               

               Cow position:
               chrX:30354488-30354783 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               215
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               204, 84
               

               Conread position:
               676-972
               

               Cow position:
               chrX:34553841-34554130 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 33
               

               Conread position:
               677-930
               

               Cow position:
               chrX:21662137-21662385 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               201
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 79
               

               Conread position:
               677-930
               

               Cow position:
               chrX:37453306-37453557 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               170
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               87, 5
               

               Conread position:
               677-966
               

               Cow position:
               chrX:30455525-30455237 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 20
               

               Conread position:
               677-969
               

               Cow position:
               chrX:29722332-29722604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               677-969
               

               Cow position:
               chrX:30136773-30136478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               217
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               17, 65
               

               Conread position:
               677-970
               

               Cow position:
               chrX:11991053-11990762 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 51
               

               Conread position:
               677-972
               

               Cow position:
               chrX:27318326-27318622 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 0
               

               Conread position:
               677-972
               

               Cow position:
               chrX:29849528-29849238 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 48
               

               Conread position:
               677-972
               

               Cow position:
               chrX:30229018-30228723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               85, 163
               

               Conread position:
               677-972
               

               Cow position:
               chrX:33583789-33584079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 101
               

               Conread position:
               678-969
               

               Cow position:
               chrX:12102867-12102577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               204
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               6, 128
               

               Conread position:
               678-969
               

               Cow position:
               chrX:42380746-42380454 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               9, 62
               

               Conread position:
               678-972
               

               Cow position:
               chrX:678002-677705 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               160, 19
               

               Conread position:
               679-967
               

               Cow position:
               chrX:18288755-18288475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               162, 71
               

               Conread position:
               680-844
               

               Cow position:
               chrX:26618222-26618387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               166
               

               Alignm identity:
               129
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               82, 0
               

               Conread position:
               680-959
               

               Cow position:
               chrX:15140438-15140168 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               211
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 193
               

               Conread position:
               680-972
               

               Cow position:
               chrX:23022410-23022704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               680-972
               

               Cow position:
               chrX:27590932-27590643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 210
               

               Conread position:
               680-972
               

               Cow position:
               chrX:28156630-28156926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               237
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 139
               

               Conread position:
               680-972
               

               Cow position:
               chrX:41879831-41879539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               224
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               80, 191
               

               Conread position:
               681-805
               

               Cow position:
               chrX:9763972-9763847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               126
               

               Alignm identity:
               96
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               681-811
               

               Cow position:
               chrX:7120706-7120837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               132
               

               Alignm identity:
               104
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               681-813
               

               Cow position:
               chrX:5427359-5427492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               134
               

               Alignm identity:
               105
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               681-837
               

               Cow position:
               chrX:27750347-27750503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               124
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               71, 117
               

               Conread position:
               681-841
               

               Cow position:
               chrX:39697866-39698021 (view UCSC Genome Browser custom track)
               

               Alignm length:
               162
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               75, 21
               

               Conread position:
               681-855
               

               Cow position:
               chrX:24346148-24346323 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-855
               

               Cow position:
               chrX:33763244-33763419 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-865
               

               Cow position:
               chrX:4767795-4767974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               185
               

               Alignm identity:
               139
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               44, 0
               

               Conread position:
               681-870
               

               Cow position:
               chrX:28058421-28058609 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               71, 171
               

               Conread position:
               681-879
               

               Cow position:
               chrX:7484906-7485105 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               156
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-886
               

               Cow position:
               chrX:22838371-22838577 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               157
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-889
               

               Cow position:
               chrX:30964887-30964678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               164
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-891
               

               Cow position:
               chrX:12651721-12651511 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               162
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               74, 147
               

               Conread position:
               681-891
               

               Cow position:
               chrX:17290279-17290490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               212
               

               Alignm identity:
               159
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-895
               

               Cow position:
               chrX:16085559-16085344 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               167
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-904
               

               Cow position:
               chrX:18023893-18023668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               172
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-911
               

               Cow position:
               chrX:33721219-33720981 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-39
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               681-927
               

               Cow position:
               chrX:15039971-15039732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               188
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               81, 36
               

               Conread position:
               681-928
               

               Cow position:
               chrX:5361109-5361357 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-934
               

               Cow position:
               chrX:30836486-30836741 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               681-942
               

               Cow position:
               chrX:20356896-20356634 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               208
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 0
               

               Conread position:
               681-956
               

               Cow position:
               chrX:30135243-30134964 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               82, 101
               

               Conread position:
               681-956
               

               Cow position:
               chrX:33685230-33685506 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-961
               

               Cow position:
               chrX:30089947-30089673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               209
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 186
               

               Conread position:
               681-967
               

               Cow position:
               chrX:19595027-19595311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               192
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               81, 200
               

               Conread position:
               681-969
               

               Cow position:
               chrX:13031112-13030823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-969
               

               Cow position:
               chrX:13928643-13928363 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 167
               

               Conread position:
               681-969
               

               Cow position:
               chrX:36479536-36479247 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-969
               

               Cow position:
               chrX:39731038-39730751 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:1947844-1947568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               33, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:2103504-2103796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:2293501-2293209 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:2479529-2479236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 192
               

               Conread position:
               681-972
               

               Cow position:
               chrX:2813383-2813091 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               83, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:3372753-3372462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:3418037-3417746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 147
               

               Conread position:
               681-972
               

               Cow position:
               chrX:4342850-4343142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:5280753-5280462 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               150, 71
               

               Conread position:
               681-972
               

               Cow position:
               chrX:5289585-5289295 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 68
               

               Conread position:
               681-972
               

               Cow position:
               chrX:5332334-5332046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 217
               

               Conread position:
               681-972
               

               Cow position:
               chrX:5334716-5334428 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 217
               

               Conread position:
               681-972
               

               Cow position:
               chrX:5647005-5646713 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:6581034-6581325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 137
               

               Conread position:
               681-972
               

               Cow position:
               chrX:8640887-8641179 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:9128154-9128447 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:9899238-9898950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               182, 10
               

               Conread position:
               681-972
               

               Cow position:
               chrX:11146234-11145946 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 263
               

               Conread position:
               681-972
               

               Cow position:
               chrX:11409235-11408943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               235
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:11461896-11461605 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 25
               

               Conread position:
               681-972
               

               Cow position:
               chrX:11566013-11566305 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:11976348-11976055 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:12145198-12145493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:12307663-12307366 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:12359987-12360279 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:13031551-13031272 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:13206054-13206343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:13406187-13405899 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 123
               

               Conread position:
               681-972
               

               Cow position:
               chrX:14162291-14162583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:14782246-14781955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 235
               

               Conread position:
               681-972
               

               Cow position:
               chrX:15977854-15977562 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:16040580-16040290 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 201
               

               Conread position:
               681-972
               

               Cow position:
               chrX:17994558-17994850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:18462873-18462584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               207
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               58, 94
               

               Conread position:
               681-972
               

               Cow position:
               chrX:19109942-19109650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:19398877-19399169 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:19474049-19473769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:19608774-19609067 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:21389677-21389969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:21414966-21415258 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:21582542-21582833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 236
               

               Conread position:
               681-972
               

               Cow position:
               chrX:21767899-21768195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               297
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:23452346-23452054 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:24468024-24467734 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               226
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 47
               

               Conread position:
               681-972
               

               Cow position:
               chrX:24483264-24482978 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               216
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:27758808-27759098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 103
               

               Conread position:
               681-972
               

               Cow position:
               chrX:27983254-27982979 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               207
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               80, 112
               

               Conread position:
               681-972
               

               Cow position:
               chrX:28313524-28313816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:29225577-29225869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:29942257-29942541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 10
               

               Conread position:
               681-972
               

               Cow position:
               chrX:30053369-30053077 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:30164139-30163847 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:30172607-30172316 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 147
               

               Conread position:
               681-972
               

               Cow position:
               chrX:30180825-30180536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 113
               

               Conread position:
               681-972
               

               Cow position:
               chrX:30199893-30199601 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:32643585-32643877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               236
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:34518825-34519117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:36195195-36195483 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 57
               

               Conread position:
               681-972
               

               Cow position:
               chrX:37080419-37080128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 142
               

               Conread position:
               681-972
               

               Cow position:
               chrX:38228218-38227920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               75, 0
               

               Conread position:
               681-972
               

               Cow position:
               chrX:42732971-42733257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 221
               

               Conread position:
               682-854
               

               Cow position:
               chrX:23221942-23221772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               130
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               140, 0
               

               Conread position:
               682-863
               

               Cow position:
               chrX:22819178-22819360 (view UCSC Genome Browser custom track)
               

               Alignm length:
               183
               

               Alignm identity:
               146
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               682-864
               

               Cow position:
               chrX:17889760-17889578 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               74, 168
               

               Conread position:
               682-864
               

               Cow position:
               chrX:20674968-20675151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               184
               

               Alignm identity:
               143
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               682-915
               

               Cow position:
               chrX:28647169-28646945 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               174
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               77, 30
               

               Conread position:
               682-960
               

               Cow position:
               chrX:28557466-28557731 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               197
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               17, 47
               

               Conread position:
               682-962
               

               Cow position:
               chrX:5303647-5303378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               191
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               261, 43
               

               Conread position:
               682-965
               

               Cow position:
               chrX:23415595-23415311 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 233
               

               Conread position:
               682-966
               

               Cow position:
               chrX:22330452-22330178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               199
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               247, 46
               

               Conread position:
               682-966
               

               Cow position:
               chrX:26442151-26441874 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               214
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               67, 113
               

               Conread position:
               682-969
               

               Cow position:
               chrX:34221865-34222138 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 186
               

               Conread position:
               682-972
               

               Cow position:
               chrX:6406453-6406738 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               215
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 120
               

               Conread position:
               682-972
               

               Cow position:
               chrX:10866762-10866476 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 15
               

               Conread position:
               682-972
               

               Cow position:
               chrX:11855265-11855560 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 0
               

               Conread position:
               682-972
               

               Cow position:
               chrX:12310289-12309994 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               682-972
               

               Cow position:
               chrX:14459067-14458776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 0
               

               Conread position:
               682-972
               

               Cow position:
               chrX:18455670-18455391 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 186
               

               Conread position:
               682-972
               

               Cow position:
               chrX:20652513-20652801 (view UCSC Genome Browser custom track)
               

               Alignm length:
               294
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 228
               

               Conread position:
               682-972
               

               Cow position:
               chrX:21592392-21592682 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 15
               

               Conread position:
               682-972
               

               Cow position:
               chrX:21832984-21833260 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 105
               

               Conread position:
               682-972
               

               Cow position:
               chrX:22538933-22538642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               682-972
               

               Cow position:
               chrX:22612503-22612776 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               73, 146
               

               Conread position:
               682-972
               

               Cow position:
               chrX:27704699-27704989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               74, 186
               

               Conread position:
               682-972
               

               Cow position:
               chrX:28624660-28624370 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               77, 51
               

               Conread position:
               682-972
               

               Cow position:
               chrX:29790717-29790430 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               177, 103
               

               Conread position:
               682-972
               

               Cow position:
               chrX:42222673-42222397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               80, 174
               

               Conread position:
               683-870
               

               Cow position:
               chrX:22118393-22118207 (view UCSC Genome Browser custom track)
               

               Alignm length:
               189
               

               Alignm identity:
               144
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               73, 145
               

               Conread position:
               683-968
               

               Cow position:
               chrX:25204437-25204722 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 270
               

               Conread position:
               683-972
               

               Cow position:
               chrX:7809892-7809618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               200
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               77, 0
               

               Conread position:
               683-972
               

               Cow position:
               chrX:8516699-8516995 (view UCSC Genome Browser custom track)
               

               Alignm length:
               298
               

               Alignm identity:
               206
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               73, 267
               

               Conread position:
               683-972
               

               Cow position:
               chrX:8529641-8529931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               683-972
               

               Cow position:
               chrX:9438613-9438895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               295
               

               Alignm identity:
               203
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               79, 20
               

               Conread position:
               683-972
               

               Cow position:
               chrX:20020680-20020968 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 215
               

               Conread position:
               683-972
               

               Cow position:
               chrX:22579286-22578998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               81, 239
               

               Conread position:
               683-972
               

               Cow position:
               chrX:28133199-28133505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               233
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 42
               

               Conread position:
               683-972
               

               Cow position:
               chrX:33822191-33822489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               220
               

               Alignm E-value:
               5.60519e-45
               

               Alignm gaps (pig, cow):
               36, 122
               

               Conread position:
               683-972
               

               Cow position:
               chrX:39556694-39556403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               293
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               79, 15
               

               Conread position:
               684-969
               

               Cow position:
               chrX:38569587-38569868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               195
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               66, 18
               

               Conread position:
               684-970
               

               Cow position:
               chrX:1789343-1789623 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               196
               

               Alignm E-value:
               6e-35
               

               Alignm gaps (pig, cow):
               227, 18
               

               Conread position:
               684-972
               

               Cow position:
               chrX:45903280-45903568 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               78, 13
               

               Conread position:
               685-972
               

               Cow position:
               chrX:23269098-23268822 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               204
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               66, 12
               

               Conread position:
               685-972
               

               Cow position:
               chrX:40070509-40070219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 0
               

               Conread position:
               686-890
               

               Cow position:
               chrX:22308467-22308268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               206
               

               Alignm identity:
               151
               

               Alignm E-value:
               4e-31
               

               Alignm gaps (pig, cow):
               66, 35
               

               Conread position:
               686-944
               

               Cow position:
               chrX:30688189-30688442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               191
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               78, 37
               

               Conread position:
               686-961
               

               Cow position:
               chrX:26508332-26508602 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               213
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 31
               

               Conread position:
               686-967
               

               Cow position:
               chrX:24129411-24129691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               82, 23
               

               Conread position:
               686-967
               

               Cow position:
               chrX:28666853-28666566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               203
               

               Alignm E-value:
               7e-36
               

               Alignm gaps (pig, cow):
               76, 26
               

               Conread position:
               686-972
               

               Cow position:
               chrX:14050090-14049803 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 0
               

               Conread position:
               686-972
               

               Cow position:
               chrX:15091660-15091378 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               76, 131
               

               Conread position:
               686-972
               

               Cow position:
               chrX:25847905-25848192 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               222
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 147
               

               Conread position:
               686-972
               

               Cow position:
               chrX:34034442-34034717 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               199
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               202, 57
               

               Conread position:
               686-972
               

               Cow position:
               chrX:35028354-35028635 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               42, 12
               

               Conread position:
               687-865
               

               Cow position:
               chrX:34564200-34564375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               180
               

               Alignm identity:
               139
               

               Alignm E-value:
               5e-33
               

               Alignm gaps (pig, cow):
               69, 22
               

               Conread position:
               687-969
               

               Cow position:
               chrX:28633358-28633088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 34
               

               Conread position:
               688-972
               

               Cow position:
               chrX:47988693-47988974 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               193
               

               Alignm E-value:
               3e-29
               

               Alignm gaps (pig, cow):
               104, 93
               

               Conread position:
               690-953
               

               Cow position:
               chrX:42954548-42954810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               63, 172
               

               Conread position:
               690-966
               

               Cow position:
               chrX:25459531-25459254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 205
               

               Conread position:
               690-967
               

               Cow position:
               chrX:15340748-15340471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               185
               

               Alignm E-value:
               9e-28
               

               Alignm gaps (pig, cow):
               48, 33
               

               Conread position:
               690-972
               

               Cow position:
               chrX:16465409-16465691 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               72, 189
               

               Conread position:
               691-857
               

               Cow position:
               chrX:20733684-20733850 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               119
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               124, 34
               

               Conread position:
               691-868
               

               Cow position:
               chrX:26966560-26966735 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               125
               

               Alignm E-value:
               4e-21
               

               Alignm gaps (pig, cow):
               44, 14
               

               Conread position:
               691-878
               

               Cow position:
               chrX:47380394-47380201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               194
               

               Alignm identity:
               144
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               691-962
               

               Cow position:
               chrX:16035399-16035132 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               199
               

               Alignm E-value:
               3.99931e-42
               

               Alignm gaps (pig, cow):
               66, 30
               

               Conread position:
               691-968
               

               Cow position:
               chrX:44018811-44019087 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               200
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               24, 177
               

               Conread position:
               691-972
               

               Cow position:
               chrX:2323816-2324098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               691-972
               

               Cow position:
               chrX:21494522-21494806 (view UCSC Genome Browser custom track)
               

               Alignm length:
               286
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 204
               

               Conread position:
               691-972
               

               Cow position:
               chrX:26974019-26974301 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               221
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               71, 0
               

               Conread position:
               692-865
               

               Cow position:
               chrX:22809359-22809537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               130
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               72, 0
               

               Conread position:
               692-907
               

               Cow position:
               chrX:15993554-15993769 (view UCSC Genome Browser custom track)
               

               Alignm length:
               217
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               64, 194
               

               Conread position:
               692-950
               

               Cow position:
               chrX:25015353-25015098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               176
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               64, 39
               

               Conread position:
               692-951
               

               Cow position:
               chrX:26447196-26447449 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               194
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               692-961
               

               Cow position:
               chrX:18244095-18244362 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 175
               

               Conread position:
               692-964
               

               Cow position:
               chrX:12465142-12465415 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               67, 0
               

               Conread position:
               692-967
               

               Cow position:
               chrX:25280714-25280435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               184
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               49, 93
               

               Conread position:
               692-967
               

               Cow position:
               chrX:45658967-45658689 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               204
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 259
               

               Conread position:
               692-968
               

               Cow position:
               chrX:37363821-37364109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               290
               

               Alignm identity:
               210
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               67, 180
               

               Conread position:
               692-972
               

               Cow position:
               chrX:21226587-21226868 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               227
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               692-972
               

               Cow position:
               chrX:31201952-31202232 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 83
               

               Conread position:
               692-972
               

               Cow position:
               chrX:34442332-34442051 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               64, 0
               

               Conread position:
               692-972
               

               Cow position:
               chrX:38935532-38935820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               230
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               65, 0
               

               Conread position:
               692-972
               

               Cow position:
               chrX:40225130-40224851 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               217
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               70, 126
               

               Conread position:
               693-855
               

               Cow position:
               chrX:26622709-26622548 (view UCSC Genome Browser custom track)
               

               Alignm length:
               164
               

               Alignm identity:
               121
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               59, 32
               

               Conread position:
               693-876
               

               Cow position:
               chrX:25817718-25817527 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               41, 130
               

               Conread position:
               693-877
               

               Cow position:
               chrX:4130476-4130291 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               69, 0
               

               Conread position:
               693-917
               

               Cow position:
               chrX:29288109-29288333 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               172
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               172, 57
               

               Conread position:
               693-967
               

               Cow position:
               chrX:17902380-17902110 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               69, 32
               

               Conread position:
               693-970
               

               Cow position:
               chrX:13135308-13135035 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               186
               

               Alignm E-value:
               7e-26
               

               Alignm gaps (pig, cow):
               17, 60
               

               Conread position:
               693-972
               

               Cow position:
               chrX:12996752-12996464 (view UCSC Genome Browser custom track)
               

               Alignm length:
               291
               

               Alignm identity:
               214
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               63, 19
               

               Conread position:
               693-972
               

               Cow position:
               chrX:28879482-28879215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               97, 73
               
UCSC Genome Browser

               Conread position:
               693-972
               

               Cow position:
               chrX:40581052-40580772 (view  custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               69, 0
               
UCSC Genome Browser

               
               
               
Conread position:694-965

               
               
               
Cow position:chrX:15151563-15151291 (view  custom track)

               
               
               
Alignm length:273

               
               
               
Alignm identity:214

               
               
               
Alignm E-value:0

               
               
               
Alignm gaps (pig, cow):62, 0
UCSC Genome Browser

               
               
               
Conread position:695-953

               
               
               
Cow position:chrX:5365481-5365227 (view  custom track)

               
               
               
Alignm length:260

               
               
               
Alignm identity:179

               
               
               
Alignm E-value:5e-32

               
               
               
Alignm gaps (pig, cow):64, 187

               
               
               Conread position:695-972
               
               
               Cow position:chrX:20131765-20131493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:191
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):31, 106

               
               
               Conread position:696-972
               
               
               Cow position:chrX:19657611-19657888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:698-972
               
               
               Cow position:chrX:24425399-24425124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:702-967
               
               
               Cow position:chrX:27408339-27408076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:194
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):23, 11

               
               
               Conread position:704-966
               
               
               Cow position:chrX:8104158-8103911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 8

               
               
               Conread position:704-972
               
               
               Cow position:chrX:35847347-35847616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:705-968
               
               
               Cow position:chrX:39701978-39702238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 28

               
               
               Conread position:705-969
               
               
               Cow position:chrX:12640494-12640748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 20

               
               
               Conread position:705-969
               
               
               Cow position:chrX:22601287-22601027 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 113

               
               
               Conread position:705-971
               
               
               Cow position:chrX:1729734-1729468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 12

               
               
               Conread position:705-972
               
               
               Cow position:chrX:20032708-20032440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:705-972
               
               
               Cow position:chrX:29170219-29169950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:705-972
               
               
               Cow position:chrX:30422012-30421757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:197
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:706-969
               
               
               Cow position:chrX:9535890-9536147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):140, 86

               
               
               Conread position:706-969
               
               
               Cow position:chrX:9837255-9837505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:197
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:707-855
               
               
               Cow position:chrX:45504137-45503987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):21, 82

               
               
               Conread position:707-965
               
               
               Cow position:chrX:37753538-37753782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:176
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 38

               
               
               Conread position:707-968
               
               
               Cow position:chrX:6026572-6026313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:186
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):51, 21

               
               
               Conread position:707-972
               
               
               Cow position:chrX:5406185-5406451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:206
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:708-965
               
               
               Cow position:chrX:42042260-42042002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:173
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):25, 179

               
               
               Conread position:708-967
               
               
               Cow position:chrX:23928048-23927798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):54, 94

               
               
               Conread position:708-967
               
               
               Cow position:chrX:37886208-37885954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):30, 38

               
               
               Conread position:708-970
               
               
               Cow position:chrX:18769046-18769298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:709-972
               
               
               Cow position:chrX:3096626-3096362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:709-972
               
               
               Cow position:chrX:7177790-7178054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):31, 167

               
               
               Conread position:711-972
               
               
               Cow position:chrX:24174032-24173774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 172

               
               
               Conread position:712-972
               
               
               Cow position:chrX:22604307-22604047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:186
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):50, 78

               
               
               Conread position:713-972
               
               
               Cow position:chrX:2932587-2932329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:713-972
               
               
               Cow position:chrX:16688399-16688659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:713-972
               
               
               Cow position:chrX:37488860-37489116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:207
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 153

               
               
               Conread position:713-972
               
               
               Cow position:chrX:37815722-37815982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:714-941
               
               
               Cow position:chrX:11448943-11448720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:714-957
               
               
               Cow position:chrX:13536925-13537168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):47, 194

               
               
               Conread position:714-967
               
               
               Cow position:chrX:35829633-35829380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):43, 24

               
               
               Conread position:714-972
               
               
               Cow position:chrX:25198581-25198832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:189
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):48, 19

               
               
               Conread position:715-961
               
               
               Cow position:chrX:11405827-11406063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:716-972
               
               
               Cow position:chrX:22871254-22871505 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):40, 154

               
               
               Conread position:717-957
               
               
               Cow position:chrX:44491296-44491058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):47, 89

               
               
               Conread position:717-967
               
               
               Cow position:chrX:13800682-13800437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:181
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):192, 11

               
               
               Conread position:717-972
               
               
               Cow position:chrX:2274055-2274308 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 206

               
               
               Conread position:717-972
               
               
               Cow position:chrX:12095451-12095194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:193
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):146, 43

               
               
               Conread position:718-967
               
               
               Cow position:chrX:22102623-22102388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:719-941
               
               
               Cow position:chrX:13071443-13071221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:719-941
               
               
               Cow position:chrX:13092003-13091781 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):43, 197

               
               
               Conread position:719-967
               
               
               Cow position:chrX:2790374-2790623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:177
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):37, 148

               
               
               Conread position:719-972
               
               
               Cow position:chrX:34008888-34009138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):37, 205

               
               
               Conread position:719-972
               
               
               Cow position:chrX:34237915-34238165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):37, 141

               
               
               Conread position:720-956
               
               
               Cow position:chrX:33827901-33827657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:183
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):32, 159

               
               
               Conread position:725-895
               
               
               Cow position:chrX:25360194-25360364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:132
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):27, 12

               
               
               Conread position:725-940
               
               
               Cow position:chrX:26340933-26340728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):37, 75

               
               
               Conread position:725-968
               
               
               Cow position:chrX:38140893-38140654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):31, 8

               
               
               Conread position:725-969
               
               
               Cow position:chrX:5639783-5639549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:186
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):31, 58

               
               
               Conread position:725-969
               
               
               Cow position:chrX:23697262-23697013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):37, 165

               
               
               Conread position:725-969
               
               
               Cow position:chrX:37544131-37544367 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:725-972
               
               
               Cow position:chrX:3596606-3596854 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:725-972
               
               
               Cow position:chrX:5892371-5892619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:725-972
               
               
               Cow position:chrX:21667160-21666919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):28, 70

               
               
               Conread position:725-972
               
               
               Cow position:chrX:34253372-34253620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:726-972
               
               
               Cow position:chrX:30139640-30139393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:190
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:726-972
               
               
               Cow position:chrX:32419327-32419562 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:184
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):30, 75

               
               
               Conread position:727-969
               
               
               Cow position:chrX:7444051-7444295 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:727-972
               
               
               Cow position:chrX:5649258-5649000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):32, 215

               
               
               Conread position:727-972
               
               
               Cow position:chrX:24509012-24509258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:727-972
               
               
               Cow position:chrX:30751921-30752166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 159

               
               
               Conread position:727-972
               
               
               Cow position:chrX:30824793-30825039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:729-972
               
               
               Cow position:chrX:5293694-5293457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:729-972
               
               
               Cow position:chrX:36376734-36376963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):30, 118

               
               
               Conread position:730-933
               
               
               Cow position:chrX:29029550-29029347 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):36, 111

               
               
               Conread position:730-967
               
               
               Cow position:chrX:11588545-11588300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:731-965
               
               
               Cow position:chrX:160579-160812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 131

               
               
               Conread position:732-972
               
               
               Cow position:chrX:25329163-25329412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):137, 17

               
               
               Conread position:734-972
               
               
               Cow position:chrX:40788287-40788525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:735-972
               
               
               Cow position:chrX:33763497-33763735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:187
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:736-892
               
               
               Cow position:chrX:32071712-32071553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:120
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):9, 134

               
               
               Conread position:738-967
               
               
               Cow position:chrX:37795319-37795092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):24, 200

               
               
               Conread position:739-967
               
               
               Cow position:chrX:24923014-24923236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:166
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):13, 111

               
               
               Conread position:739-972
               
               
               Cow position:chrX:30144127-30143893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:739-972
               
               
               Cow position:chrX:41106845-41106618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):23, 121

               
               
               Conread position:740-967
               
               
               Cow position:chrX:23586963-23587185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 129

               
               
               Conread position:740-972
               
               
               Cow position:chrX:24735110-24735335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):27, 76

               
               
               Conread position:740-972
               
               
               Cow position:chrX:30817111-30816878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:181
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:741-972
               
               
               Cow position:chrX:2185408-2185631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):125, 0

               
               
               Conread position:741-972
               
               
               Cow position:chrX:20742151-20742378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):21, 162

               
               
               Conread position:742-972
               
               
               Cow position:chrX:34719673-34719904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:743-950
               
               
               Cow position:chrX:45364622-45364407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):16, 36

               
               
               Conread position:744-972
               
               
               Cow position:chrX:34990226-34990452 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:745-972
               
               
               Cow position:chrX:2763736-2763955 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:745-972
               
               
               Cow position:chrX:27996814-27997042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:168
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:745-972
               
               
               Cow position:chrX:40707637-40707859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:166
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:746-961
               
               
               Cow position:chrX:11083442-11083227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:171
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):10, 179

               
               
               Conread position:746-972
               
               
               Cow position:chrX:39387266-39387038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:172
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:746-972
               
               
               Cow position:chrX:40278981-40279200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):122, 0

               
               
               Conread position:750-949
               
               
               Cow position:chrX:33630654-33630869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:750-969
               
               
               Cow position:chrX:21318853-21319066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):161, 17

               
               
               Conread position:752-934
               
               
               Cow position:chrX:36794177-36794362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:752-969
               
               
               Cow position:chrX:38999080-38999291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):59, 16

               
               
               Conread position:752-972
               
               
               Cow position:chrX:18987622-18987829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:752-972
               
               
               Cow position:chrX:35408806-35409025 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 41

               
               
               Conread position:753-965
               
               
               Cow position:chrX:19880172-19880383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:151
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):156, 64

               
               
               Conread position:753-972
               
               
               Cow position:chrX:42539776-42539990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):67, 100

               
               
               Conread position:755-922
               
               
               Cow position:chrX:17743223-17743388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:755-967
               
               
               Cow position:chrX:6673553-6673762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:755-972
               
               
               Cow position:chrX:11613678-11613900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):101, 158

               
               
               Conread position:756-955
               
               
               Cow position:chrX:19163648-19163449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:757-953
               
               
               Cow position:chrX:25839520-25839709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:757-972
               
               
               Cow position:chrX:13524419-13524209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:759-972
               
               
               Cow position:chrX:16517954-16517741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:169
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:759-972
               
               
               Cow position:chrX:16854208-16853999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:174
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):184, 0

               
               
               Conread position:760-929
               
               
               Cow position:chrX:26633899-26633730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:760-939
               
               
               Cow position:chrX:42010228-42010408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):40, 45

               
               
               Conread position:760-972
               
               
               Cow position:chrX:34078225-34078441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):13, 51

               
               
               Conread position:761-962
               
               
               Cow position:chrX:20878587-20878386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:162
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:761-966
               
               
               Cow position:chrX:336879-337081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:761-966
               
               
               Cow position:chrX:28327288-28327083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:164
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:761-966
               
               
               Cow position:chrX:36250679-36250477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:160
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):138, 0

               
               
               Conread position:761-967
               
               
               Cow position:chrX:23121579-23121794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):126, 42

               
               
               Conread position:761-967
               
               
               Cow position:chrX:37959795-37959990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:761-969
               
               
               Cow position:chrX:12033739-12033535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):122, 64

               
               
               Conread position:761-969
               
               
               Cow position:chrX:21500810-21501006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:761-970
               
               
               Cow position:chrX:14268016-14267816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:761-972
               
               
               Cow position:chrX:362273-362062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:167
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:761-972
               
               
               Cow position:chrX:18451899-18451688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:761-972
               
               
               Cow position:chrX:29779903-29780121 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):119, 0

               
               
               Conread position:762-937
               
               
               Cow position:chrX:19650320-19650145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:762-961
               
               
               Cow position:chrX:3569232-3569432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:156
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):188, 0

               
               
               Conread position:763-967
               
               
               Cow position:chrX:11509018-11509224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:763-967
               
               
               Cow position:chrX:37781886-37781687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:763-972
               
               
               Cow position:chrX:10438744-10438547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:166
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:763-972
               
               
               Cow position:chrX:40545440-40545231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:766-963
               
               
               Cow position:chrX:13786193-13786000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:767-972
               
               
               Cow position:chrX:38007799-38007591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:160
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):114, 0

               
               
               Conread position:771-972
               
               
               Cow position:chrX:27445867-27446066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:161
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):100, 152

               
               
               Conread position:773-967
               
               
               Cow position:chrX:28079987-28080177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:144
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:776-962
               
               
               Cow position:chrX:36513372-36513554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:151
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):167, 0

               
               
               Conread position:776-962
               
               
               Cow position:chrX:45112882-45113056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:776-967
               
               
               Cow position:chrX:11112438-11112247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):67, 74

               
               
               Conread position:776-967
               
               
               Cow position:chrX:23522298-23522112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):142, 0

               
               
               Conread position:776-967
               
               
               Cow position:chrX:40571727-40571542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:776-972
               
               
               Cow position:chrX:4177017-4177210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:776-972
               
               
               Cow position:chrX:6492930-6493124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:156
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:776-972
               
               
               Cow position:chrX:15346774-15346578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:159
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:776-972
               
               
               Cow position:chrX:20580352-20580159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:776-972
               
               
               Cow position:chrX:28706297-28706493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:160
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:776-972
               
               
               Cow position:chrX:40827544-40827353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:776-972
               
               
               Cow position:chrX:43789637-43789448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:777-928
               
               
               Cow position:chrX:41595188-41595039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):115, 0

               
               
               Conread position:778-910
               
               
               Cow position:chrX:19128019-19127887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:779-928
               
               
               Cow position:chrX:6690928-6690787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:779-967
               
               
               Cow position:chrX:67147-67338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:780-972
               
               
               Cow position:chrX:10931873-10932064 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:156
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:781-970
               
               
               Cow position:chrX:27385730-27385545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:130
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):92, 0

               
               
               Conread position:783-969
               
               
               Cow position:chrX:40478608-40478796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:783-972
               
               
               Cow position:chrX:2146302-2146483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:783-972
               
               
               Cow position:chrX:5426515-5426326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:149
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:783-972
               
               
               Cow position:chrX:28559632-28559443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:151
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:784-969
               
               
               Cow position:chrX:5375567-5375752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:151
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:789-972
               
               
               Cow position:chrX:7571083-7571261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:790-972
               
               
               Cow position:chrX:38839840-38840024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 127

               
               
               Conread position:790-972
               
               
               Cow position:chrX:44929811-44929993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:138
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):132, 71

               
               
               Conread position:792-964
               
               
               Cow position:chrX:28110434-28110606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):100, 34

               
               
               Conread position:796-972
               
               
               Cow position:chrX:24321051-24320881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:799-972
               
               
               Cow position:chrX:31605130-31604957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:142
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:803-965
               
               
               Cow position:chrX:45464671-45464832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:128
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:803-966
               
               
               Cow position:chrX:28058591-28058753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:803-972
               
               
               Cow position:chrX:43566674-43566844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:804-972
               
               
               Cow position:chrX:7695007-7695171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:805-967
               
               
               Cow position:chrX:12092802-12092641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:115
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:805-969
               
               
               Cow position:chrX:26617697-26617533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:130
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:807-969
               
               
               Cow position:chrX:28214286-28214448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:807-972
               
               
               Cow position:chrX:2365890-2366056 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:122
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):72, 54

               
               
               Conread position:807-972
               
               
               Cow position:chrX:11819590-11819755 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:131
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):74, 118

               
               
               Conread position:808-967
               
               
               Cow position:chrX:7748116-7747961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):81, 45

               
               
               Conread position:812-953
               
               
               Cow position:chrX:833573-833428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):76, 0

               
               
               Conread position:812-972
               
               
               Cow position:chrX:5246450-5246609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:818-961
               
               
               Cow position:chrX:26844744-26844888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:818-972
               
               
               Cow position:chrX:1793928-1793777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:820-962
               
               
               Cow position:chrX:44206201-44206344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:820-972
               
               
               Cow position:chrX:32330870-32331022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:121
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):20, 6

               
               
               Conread position:821-969
               
               
               Cow position:chrX:7119404-7119256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:124
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:821-972
               
               
               Cow position:chrX:20976812-20976656 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:120
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:821-972
               
               
               Cow position:chrX:45042786-45042946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:822-972
               
               
               Cow position:chrX:38052191-38052041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:120
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:824-972
               
               
               Cow position:chrX:12457941-12458089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:121
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:827-972
               
               
               Cow position:chrX:10146423-10146276 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:827-972
               
               
               Cow position:chrX:12001901-12001756 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:827-972
               
               
               Cow position:chrX:19211293-19211143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 64

               
               
               Conread position:828-972
               
               
               Cow position:chrX:1331192-1331333 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:110
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:830-972
               
               
               Cow position:chrX:22521972-22521830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:830-972
               
               
               Cow position:chrX:38014343-38014485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:830-972
               
               
               Cow position:chrX:42466774-42466633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:112
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:831-972
               
               
               Cow position:chrX:5305851-5305992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:831-972
               
               
               Cow position:chrX:16285461-16285602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:832-972
               
               
               Cow position:chrX:22140434-22140301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):75, 35

               
               
               Conread position:834-972
               
               
               Cow position:chrX:22493260-22493398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:112
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:836-965
               
               
               Cow position:chrX:28542624-28542499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:836-972
               
               
               Cow position:chrX:26506686-26506550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:107
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:838-966
               
               
               Cow position:chrX:17794090-17794214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:838-972
               
               
               Cow position:chrX:33668990-33669124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:135
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:839-972
               
               
               Cow position:chrX:12097553-12097686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:841-965
               
               
               Cow position:chrX:10915294-10915422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):58, 0

               
               
               Conread position:841-972
               
               
               Cow position:chrX:39698263-39698394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:843-972
               
               
               Cow position:chrX:32057650-32057521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:843-972
               
               
               Cow position:chrX:41886090-41886219 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:106
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:845-972
               
               
               Cow position:chrX:730089-729966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:103
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:846-972
               
               
               Cow position:chrX:15173259-15173133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:128
               
               
               Alignm identity:105
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):17, 10

               
               
               Conread position:847-972
               
               
               Cow position:chrX:10256877-10256749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:847-972
               
               
               Cow position:chrX:10923305-10923180 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:850-972
               
               
               Cow position:chrX:30430091-30429967 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:99
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:852-972
               
               
               Cow position:chrX:10465056-10465176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:854-967
               
               
               Cow position:chrX:17283036-17282921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:92
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:860-963
               
               
               Cow position:chrX:9953396-9953497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:86
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:860-972
               
               
               Cow position:chrX:22812341-22812453 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:90
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:869-972
               
               
               Cow position:chrX:11358777-11358674 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:89
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:872-972
               
               
               Cow position:chrX:30821875-30821975 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:101
               
               
               Alignm identity:84
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:873-972
               
               
               Cow position:chrX:15439342-15439243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:100
               
               
               Alignm identity:84
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:875-972
               
               
               Cow position:chrX:7486158-7486255 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:875-972
               
               
               Cow position:chrX:13971945-13971848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:98
               
               
               Alignm identity:82
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:877-972
               
               
               Cow position:chrX:42120600-42120694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:96
               
               
               Alignm identity:81
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:885-972
               
               
               Cow position:chrX:1976293-1976206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:885-972
               
               
               Cow position:chrX:30965405-30965492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:88
               
               
               Alignm identity:76
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):0, 0
Show alignments to all cow chromosomes.