Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8035I16.3 |
| Conread position: | 1-348 |
| Cow position: | chr13:56292175-56291830 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 223, 20 |
| Conread position: | 3-215 |
| Cow position: | chr13:56334083-56334295 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-353 |
| Cow position: | chr13:39984510-39984860 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 221, 212 |
| Conread position: | 3-477 |
| Cow position: | chr13:39984426-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 221, 211 |
| Conread position: | 3-553 |
| Cow position: | chr13:56292333-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 351 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 100, 115 |
| Conread position: | 3-772 |
| Cow position: | chr13:39984006-39984778 (view UCSC Genome Browser custom track) |
| Alignm length: | 777 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 346 |
| Conread position: | 4-561 |
| Cow position: | chr13:39984343-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 347 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 246, 250 |
| Conread position: | 4-637 |
| Cow position: | chr13:39984259-39984895 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 212 |
| Conread position: | 4-687 |
| Cow position: | chr13:39984175-39984861 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 212 |
| Conread position: | 29-772 |
| Cow position: | chr13:39983948-39984694 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 357 |
| Conread position: | 33-776 |
| Cow position: | chr13:24162623-24163369 (view UCSC Genome Browser custom track) |
| Alignm length: | 756 |
| Alignm identity: | 441 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 82 |
| Conread position: | 35-772 |
| Cow position: | chr13:39983870-39984610 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 413, 656 |
| Conread position: | 37-742 |
| Cow position: | chr13:56333604-56334321 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 429 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 91, 79 |
| Conread position: | 42-491 |
| Cow position: | chr13:39930709-39931159 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 52, 59 |
| Conread position: | 43-749 |
| Cow position: | chr13:22124991-22125700 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 412 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 106, 75 |
| Conread position: | 52-769 |
| Cow position: | chr13:56292872-56292160 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 442 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 172, 18 |
| Conread position: | 54-566 |
| Cow position: | chr13:39930637-39931152 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 329 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 61-772 |
| Cow position: | chr13:39983812-39984526 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 77 |
| Conread position: | 79-495 |
| Cow position: | chr13:56292181-56291762 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 102-779 |
| Cow position: | chr13:56333501-56334190 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 413 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 92, 86 |
| Conread position: | 110-676 |
| Cow position: | chr13:39930609-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 359 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 13 |
| Conread position: | 123-772 |
| Cow position: | chr13:39983790-39984442 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 175 |
| Conread position: | 207-743 |
| Cow position: | chr13:39930621-39931159 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 343 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 17, 102 |
| Conread position: | 287-780 |
| Cow position: | chr13:56292301-56291815 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 99 |
| Conread position: | 295-686 |
| Cow position: | chr13:56317325-56317711 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 302-778 |
| Cow position: | chr13:22124828-22125309 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 273 |
| Conread position: | 307-778 |
| Cow position: | chr13:39930638-39931112 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 309 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 103, 88 |
| Conread position: | 394-776 |
| Cow position: | chr13:56317341-56317717 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 243 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 54, 13 |
| Conread position: | 452-666 |
| Cow position: | chr13:56317563-56317775 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 189, 101 |
| Conread position: | 453-773 |
| Cow position: | chr13:39983874-39984191 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 252, 15 |
| Conread position: | 460-691 |
| Cow position: | chr13:56317930-56318161 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 460-778 |
| Cow position: | chr13:22124739-22125057 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 127, 91 |
| Conread position: | 460-778 |
| Cow position: | chr13:24162465-24162783 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 140, 154 |
| Conread position: | 460-812 |
| Cow position: | chr13:56333694-56334050 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 71, 62 |
| Conread position: | 463-778 |
| Cow position: | chr13:39930629-39930944 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 134, 141 |
| Conread position: | 490-774 |
| Cow position: | chr13:56317881-56318160 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 188, 20 |
| Conread position: | 493-781 |
| Cow position: | chr13:56292849-56292567 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 101, 74 |
| Conread position: | 505-778 |
| Cow position: | chr13:39930587-39930860 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 99 |
Show alignments to all cow chromosomes.