Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8035I16.3 |
| Conread position: | 1-352 |
| Cow position: | chr19:14948359-14948008 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-571 |
| Cow position: | chr19:14915985-14916543 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 345 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 152 |
| Conread position: | 1-581 |
| Cow position: | chr19:20635609-20635026 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 381 |
| Conread position: | 1-598 |
| Cow position: | chr19:23597137-23597736 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 578 |
| Conread position: | 1-647 |
| Cow position: | chr19:14960367-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 155 |
| Conread position: | 1-651 |
| Cow position: | chr19:14959461-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 231, 153 |
| Conread position: | 1-660 |
| Cow position: | chr19:20678143-20678802 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 30 |
| Conread position: | 1-726 |
| Cow position: | chr19:14940348-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 1-731 |
| Cow position: | chr19:14959545-14958827 (view UCSC Genome Browser custom track) |
| Alignm length: | 738 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 114 |
| Conread position: | 1-738 |
| Cow position: | chr19:23649746-23650486 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 380 |
| Conread position: | 1-739 |
| Cow position: | chr19:14960033-14959308 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 93 |
| Conread position: | 1-743 |
| Cow position: | chr19:20678059-20678801 (view UCSC Genome Browser custom track) |
| Alignm length: | 753 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 117 |
| Conread position: | 1-767 |
| Cow position: | chr19:43570441-43569687 (view UCSC Genome Browser custom track) |
| Alignm length: | 771 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 50 |
| Conread position: | 1-770 |
| Cow position: | chr19:14940096-14940868 (view UCSC Genome Browser custom track) |
| Alignm length: | 776 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 1-770 |
| Cow position: | chr19:20677891-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 117 |
| Conread position: | 1-772 |
| Cow position: | chr19:14960117-14959359 (view UCSC Genome Browser custom track) |
| Alignm length: | 775 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 177 |
| Conread position: | 1-772 |
| Cow position: | chr19:20677639-20678413 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 381 |
| Conread position: | 1-772 |
| Cow position: | chr19:23613456-23614230 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 93 |
| Conread position: | 1-772 |
| Cow position: | chr19:23613876-23614650 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 457 |
| Conread position: | 1-773 |
| Cow position: | chr19:20677471-20678246 (view UCSC Genome Browser custom track) |
| Alignm length: | 782 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 127 |
| Conread position: | 1-773 |
| Cow position: | chr19:20677807-20678582 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 200 |
| Conread position: | 1-773 |
| Cow position: | chr19:23614296-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 1-774 |
| Cow position: | chr19:23614212-23614988 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 1-776 |
| Cow position: | chr19:14960199-14959439 (view UCSC Genome Browser custom track) |
| Alignm length: | 781 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 49 |
| Conread position: | 1-778 |
| Cow position: | chr19:23613960-23614740 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 351 |
| Conread position: | 1-779 |
| Cow position: | chr19:14940264-14941045 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 382 |
| Conread position: | 1-779 |
| Cow position: | chr19:23649578-23650359 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 690 |
| Conread position: | 1-785 |
| Cow position: | chr19:23649662-23650449 (view UCSC Genome Browser custom track) |
| Alignm length: | 790 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 261 |
| Conread position: | 3-770 |
| Cow position: | chr19:23613374-23614144 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 442, 620 |
| Conread position: | 4-303 |
| Cow position: | chr19:23614803-23615102 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-755 |
| Cow position: | chr19:20635752-20635020 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 51 |
| Conread position: | 31-773 |
| Cow position: | chr19:23596918-23597661 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 88 |
| Conread position: | 34-777 |
| Cow position: | chr19:23649443-23650189 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 94 |
| Conread position: | 34-778 |
| Cow position: | chr19:14940045-14940792 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 597 |
| Conread position: | 34-778 |
| Cow position: | chr19:14959678-14958948 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 412, 27 |
| Conread position: | 38-644 |
| Cow position: | chr19:43570247-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 515 |
| Conread position: | 42-738 |
| Cow position: | chr19:23614421-23615118 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 684 |
| Conread position: | 42-739 |
| Cow position: | chr19:14960410-14959714 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 406, 259 |
| Conread position: | 42-770 |
| Cow position: | chr19:20677764-20678495 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 81 |
| Conread position: | 42-779 |
| Cow position: | chr19:23649283-23650023 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 319 |
| Conread position: | 43-447 |
| Cow position: | chr19:14948401-14947997 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 341, 347 |
| Conread position: | 52-674 |
| Cow position: | chr19:23597104-23597730 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 164 |
| Conread position: | 55-773 |
| Cow position: | chr19:20677441-20678162 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 335, 327 |
| Conread position: | 59-772 |
| Cow position: | chr19:20636118-20635423 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 423 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 340, 67 |
| Conread position: | 61-773 |
| Cow position: | chr19:14939988-14940703 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 387, 547 |
| Conread position: | 62-773 |
| Cow position: | chr19:14960472-14959764 (view UCSC Genome Browser custom track) |
| Alignm length: | 716 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 29 |
| Conread position: | 63-772 |
| Cow position: | chr19:23613350-23614062 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 318 |
| Conread position: | 63-779 |
| Cow position: | chr19:23649388-23650107 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 243 |
| Conread position: | 65-772 |
| Cow position: | chr19:23596868-23597575 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 151 |
| Conread position: | 79-742 |
| Cow position: | chr19:23597047-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 622 |
| Conread position: | 118-779 |
| Cow position: | chr19:23596836-23597498 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 24 |
| Conread position: | 128-779 |
| Cow position: | chr19:43570398-43569755 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 5 |
| Conread position: | 136-777 |
| Cow position: | chr19:14960484-14959842 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 49 |
| Conread position: | 138-739 |
| Cow position: | chr19:14915955-14916543 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 382 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 50, 18 |
| Conread position: | 145-778 |
| Cow position: | chr19:14939988-14940624 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 562 |
| Conread position: | 147-774 |
| Cow position: | chr19:23613350-23613980 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 69 |
| Conread position: | 223-773 |
| Cow position: | chr19:20635639-20635086 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 163 |
| Conread position: | 230-779 |
| Cow position: | chr19:14939989-14940541 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 461 |
| Conread position: | 262-773 |
| Cow position: | chr19:43570431-43569929 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 295-779 |
| Cow position: | chr19:14960409-14959924 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 100 |
| Conread position: | 300-779 |
| Cow position: | chr19:14939976-14940457 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 9 |
| Conread position: | 318-779 |
| Cow position: | chr19:14948460-14947998 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 8 |
| Conread position: | 467-774 |
| Cow position: | chr19:14915952-14916257 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 63, 6 |
| Conread position: | 478-779 |
| Cow position: | chr19:14960475-14960174 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 481-777 |
| Cow position: | chr19:23613351-23613647 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 221, 196 |
Show alignments to all cow chromosomes.