Cow genome map

Conread name: Ss1.1-Pig4-TMW8035I16.3

Conread position: 1-244
Cow position: chr22:11641216-11641459 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 102, 116

Conread position: 1-394
Cow position: chr22:12418837-12418444 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 241
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 188, 201

Conread position: 1-485
Cow position: chr22:11701207-11701694 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 305
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 39, 21

Conread position: 1-494
Cow position: chr22:11666469-11666965 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 315
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 127, 99

Conread position: 1-521
Cow position: chr22:12419005-12418482 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 0

Conread position: 1-537
Cow position: chr22:12431130-12430591 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 334
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 189, 203

Conread position: 1-568
Cow position: chr22:11701123-11701693 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 117

Conread position: 1-646
Cow position: chr22:12399402-12398754 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 374

Conread position: 1-652
Cow position: chr22:12458418-12457764 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 450, 0

Conread position: 1-657
Cow position: chr22:11640796-11641455 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 188

Conread position: 1-676
Cow position: chr22:12544603-12545281 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 391
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 228, 244

Conread position: 1-734
Cow position: chr22:12385646-12384908 (view UCSC Genome Browser custom track)
Alignm length: 741
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 193

Conread position: 1-742
Cow position: chr22:12476031-12475287 (view UCSC Genome Browser custom track)
Alignm length: 745
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 450, 0

Conread position: 1-742
Cow position: chr22:12499228-12499972 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 379, 374

Conread position: 1-770
Cow position: chr22:12432306-12431534 (view UCSC Genome Browser custom track)
Alignm length: 773
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 443, 0

Conread position: 1-770
Cow position: chr22:12476367-12475595 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 136

Conread position: 1-772
Cow position: chr22:12498892-12499666 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 136

Conread position: 1-772
Cow position: chr22:12498976-12499750 (view UCSC Genome Browser custom track)
Alignm length: 777
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 213

Conread position: 1-773
Cow position: chr22:12431886-12431111 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 96

Conread position: 1-773
Cow position: chr22:12476199-12475424 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 447, 0

Conread position: 1-773
Cow position: chr22:12476283-12475508 (view UCSC Genome Browser custom track)
Alignm length: 778
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 215

Conread position: 1-777
Cow position: chr22:12476115-12475336 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 449, 625

Conread position: 1-777
Cow position: chr22:12499144-12499923 (view UCSC Genome Browser custom track)
Alignm length: 780
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 449, 0

Conread position: 1-778
Cow position: chr22:12399822-12399042 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 51

Conread position: 1-778
Cow position: chr22:12431382-12430602 (view UCSC Genome Browser custom track)
Alignm length: 783
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 24

Conread position: 1-789
Cow position: chr22:12431970-12431180 (view UCSC Genome Browser custom track)
Alignm length: 792
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 786

Conread position: 2-687
Cow position: chr22:14442151-14442827 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 413
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 36, 28

Conread position: 3-772
Cow position: chr22:14429754-14430526 (view UCSC Genome Browser custom track)
Alignm length: 781
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 25

Conread position: 3-779
Cow position: chr22:12399568-12398789 (view UCSC Genome Browser custom track)
Alignm length: 782
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 392

Conread position: 4-518
Cow position: chr22:14468168-14468684 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 305
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 202, 187

Conread position: 4-602
Cow position: chr22:14430427-14431021 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 370
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 35, 26

Conread position: 4-657
Cow position: chr22:46654206-46654863 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 187

Conread position: 4-727
Cow position: chr22:12545194-12545893 (view UCSC Genome Browser custom track)
Alignm length: 730
Alignm identity: 442
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 23, 31

Conread position: 4-772
Cow position: chr22:46654038-46654809 (view UCSC Genome Browser custom track)
Alignm length: 776
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 187

Conread position: 34-620
Cow position: chr22:12431181-12430592 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 228

Conread position: 34-730
Cow position: chr22:12399453-12398754 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 574

Conread position: 34-770
Cow position: chr22:12431517-12430778 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 361

Conread position: 34-773
Cow position: chr22:14468030-14468762 (view UCSC Genome Browser custom track)
Alignm length: 752
Alignm identity: 446
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 88, 82

Conread position: 40-742
Cow position: chr22:14442021-14442723 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 411
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 172, 152

Conread position: 40-745
Cow position: chr22:11640751-11641459 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 322

Conread position: 41-772
Cow position: chr22:14430044-14430778 (view UCSC Genome Browser custom track)
Alignm length: 742
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 152

Conread position: 41-773
Cow position: chr22:14429960-14430695 (view UCSC Genome Browser custom track)
Alignm length: 744
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 118

Conread position: 42-782
Cow position: chr22:12476410-12475667 (view UCSC Genome Browser custom track)
Alignm length: 748
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 344

Conread position: 42-782
Cow position: chr22:12498849-12499592 (view UCSC Genome Browser custom track)
Alignm length: 747
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 344

Conread position: 51-738
Cow position: chr22:12458452-12457762 (view UCSC Genome Browser custom track)
Alignm length: 693
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 165

Conread position: 51-769
Cow position: chr22:12458536-12457815 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 324

Conread position: 51-772
Cow position: chr22:12419224-12418483 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 361

Conread position: 51-778
Cow position: chr22:12458620-12457890 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 335

Conread position: 51-779
Cow position: chr22:11640678-11641409 (view UCSC Genome Browser custom track)
Alignm length: 734
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 9

Conread position: 52-754
Cow position: chr22:14430223-14430928 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 57

Conread position: 52-779
Cow position: chr22:12432423-12431693 (view UCSC Genome Browser custom track)
Alignm length: 731
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 0

Conread position: 59-780
Cow position: chr22:12419300-12418559 (view UCSC Genome Browser custom track)
Alignm length: 743
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 201, 353

Conread position: 63-785
Cow position: chr22:12431404-12430679 (view UCSC Genome Browser custom track)
Alignm length: 727
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 243

Conread position: 65-779
Cow position: chr22:12385666-12384947 (view UCSC Genome Browser custom track)
Alignm length: 723
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 330

Conread position: 70-779
Cow position: chr22:12399837-12399125 (view UCSC Genome Browser custom track)
Alignm length: 714
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 369, 464

Conread position: 73-778
Cow position: chr22:11640616-11641324 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 368, 457

Conread position: 76-779
Cow position: chr22:12399909-12399209 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 70

Conread position: 77-651
Cow position: chr22:12419013-12418434 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 539

Conread position: 77-779
Cow position: chr22:12544847-12545543 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 422
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 37, 23

Conread position: 79-771
Cow position: chr22:14467991-14468685 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 419
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 224, 219

Conread position: 92-737
Cow position: chr22:11701046-11701694 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 26

Conread position: 127-773
Cow position: chr22:14467955-14468604 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 401
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 167, 148

Conread position: 127-778
Cow position: chr22:12476409-12475755 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 173

Conread position: 127-788
Cow position: chr22:12385688-12385024 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 13

Conread position: 128-770
Cow position: chr22:12458627-12457982 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 490

Conread position: 130-773
Cow position: chr22:11640589-11641235 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 171

Conread position: 144-789
Cow position: chr22:12432499-12431852 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 478

Conread position: 156-736
Cow position: chr22:12419018-12418435 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 0

Conread position: 167-773
Cow position: chr22:14429501-14430107 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 272, 128

Conread position: 172-779
Cow position: chr22:46654038-46654648 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 280-771
Cow position: chr22:12476424-12475930 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 33

Conread position: 280-771
Cow position: chr22:12498835-12499329 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 33

Conread position: 286-772
Cow position: chr22:14442015-14442504 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 303
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 17, 12

Conread position: 294-741
Cow position: chr22:11666510-11666960 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 14

Conread position: 294-772
Cow position: chr22:11701164-11701645 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 14

Conread position: 295-773
Cow position: chr22:14441940-14442421 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 296
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 104, 87

Conread position: 305-772
Cow position: chr22:46654003-46654473 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 306
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 143, 222

Conread position: 319-772
Cow position: chr22:11666451-11666907 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 76

Conread position: 319-781
Cow position: chr22:11701105-11701570 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 76

Conread position: 325-780
Cow position: chr22:12544591-12545049 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 278
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 65, 61

Conread position: 389-771
Cow position: chr22:12432589-12432205 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 258
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 41, 12

Conread position: 402-773
Cow position: chr22:14467979-14468352 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 245
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 44, 6

Conread position: 403-781
Cow position: chr22:11666451-11666832 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 251
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 45, 137

Conread position: 447-779
Cow position: chr22:12458641-12458309 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 461-687
Cow position: chr22:12419315-12419089 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 166
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 469-779
Cow position: chr22:46654002-46654312 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 212
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 62, 55

Conread position: 484-771
Cow position: chr22:12399918-12399637 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 204
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 78, 0

Conread position: 507-773
Cow position: chr22:46653956-46654222 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 172
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 117, 122

Conread position: 542-779
Cow position: chr22:12419318-12419081 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 53, 66

Conread position: 542-783
Cow position: chr22:12385690-12385448 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 163
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 26, 20

Conread position: 608-779
Cow position: chr22:12458646-12458477 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 121
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 0

Show alignments to all cow chromosomes.