Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8035I16.3 |
| Conread position: | 1-238 |
| Cow position: | chr23:25698298-25698061 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 222, 215 |
| Conread position: | 1-268 |
| Cow position: | chr23:24654139-24654406 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-300 |
| Cow position: | chr23:24639826-24640124 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 188 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 282, 0 |
| Conread position: | 1-311 |
| Cow position: | chr23:24654055-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-325 |
| Cow position: | chr23:24639742-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 32 |
| Conread position: | 1-372 |
| Cow position: | chr23:25660341-25660712 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-404 |
| Cow position: | chr23:24639658-24640061 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-416 |
| Cow position: | chr23:24547056-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 265 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-423 |
| Cow position: | chr23:24626330-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 377 |
| Conread position: | 1-484 |
| Cow position: | chr23:24560532-24560044 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 427, 407 |
| Conread position: | 1-562 |
| Cow position: | chr23:25660173-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 1-608 |
| Cow position: | chr23:24536023-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 305 |
| Conread position: | 1-641 |
| Cow position: | chr23:25724105-25723465 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 122 |
| Conread position: | 1-645 |
| Cow position: | chr23:24547308-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 1-738 |
| Cow position: | chr23:24560868-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 21 |
| Conread position: | 1-778 |
| Cow position: | chr23:25626220-25626997 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 215 |
| Conread position: | 1-778 |
| Cow position: | chr23:25626304-25627082 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 231 |
| Conread position: | 1-779 |
| Cow position: | chr23:24522546-24521762 (view UCSC Genome Browser custom track) |
| Alignm length: | 801 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 307 |
| Conread position: | 1-779 |
| Cow position: | chr23:24639238-24640019 (view UCSC Genome Browser custom track) |
| Alignm length: | 785 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 158 |
| Conread position: | 1-780 |
| Cow position: | chr23:25626136-25626915 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 722 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-750 |
| Cow position: | chr23:24639324-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 68 |
| Conread position: | 4-399 |
| Cow position: | chr23:25698463-25698068 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 34-488 |
| Cow position: | chr23:24626279-24626735 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 342 |
| Conread position: | 34-642 |
| Cow position: | chr23:25698685-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 89 |
| Conread position: | 34-673 |
| Cow position: | chr23:24639439-24640081 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 42-779 |
| Cow position: | chr23:25626009-25626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 352 |
| Conread position: | 51-781 |
| Cow position: | chr23:24522745-24522001 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 135 |
| Conread position: | 55-780 |
| Cow position: | chr23:24560896-24560170 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 21 |
| Conread position: | 57-646 |
| Cow position: | chr23:25660145-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 241 |
| Conread position: | 64-687 |
| Cow position: | chr23:24522814-24522193 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 27 |
| Conread position: | 64-771 |
| Cow position: | chr23:24639217-24639927 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 172 |
| Conread position: | 70-352 |
| Cow position: | chr23:24521971-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 152, 145 |
| Conread position: | 73-353 |
| Cow position: | chr23:24654043-24654323 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 181 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 143, 149 |
| Conread position: | 73-729 |
| Cow position: | chr23:24547320-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 0 |
| Conread position: | 114-781 |
| Cow position: | chr23:25625997-25626664 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 271 |
| Conread position: | 127-726 |
| Cow position: | chr23:25698676-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 64 |
| Conread position: | 128-779 |
| Cow position: | chr23:24639197-24639851 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 136-776 |
| Cow position: | chr23:24522826-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 13 |
| Conread position: | 142-739 |
| Cow position: | chr23:25660146-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 166 |
| Conread position: | 142-777 |
| Cow position: | chr23:24536050-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 72 |
| Conread position: | 143-557 |
| Cow position: | chr23:25724131-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 270 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 47, 35 |
| Conread position: | 144-779 |
| Cow position: | chr23:25625945-25626581 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 7 |
| Conread position: | 163-771 |
| Cow position: | chr23:24547314-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 189 |
| Conread position: | 191-671 |
| Cow position: | chr23:24626268-24626749 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 457 |
| Conread position: | 211-780 |
| Cow position: | chr23:25698676-25698104 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 319 |
| Conread position: | 222-780 |
| Cow position: | chr23:24536054-24535493 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 0 |
| Conread position: | 225-776 |
| Cow position: | chr23:25660145-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 241 |
| Conread position: | 247-776 |
| Cow position: | chr23:24547314-24546782 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 117 |
| Conread position: | 262-583 |
| Cow position: | chr23:24654064-24654388 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 41, 36 |
| Conread position: | 281-756 |
| Cow position: | chr23:24626274-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 451 |
| Conread position: | 324-670 |
| Cow position: | chr23:24654042-24654391 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 68, 58 |
| Conread position: | 331-726 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 42 |
| Conread position: | 391-777 |
| Cow position: | chr23:24522823-24522439 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 397-765 |
| Cow position: | chr23:24654032-24654402 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 9 |
| Conread position: | 398-773 |
| Cow position: | chr23:24547331-24546953 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 399-778 |
| Cow position: | chr23:25660151-25660533 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 223 |
| Conread position: | 410-779 |
| Cow position: | chr23:24626319-24626691 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 421-778 |
| Cow position: | chr23:25724105-25723745 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 423-779 |
| Cow position: | chr23:24626251-24626607 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 46 |
| Conread position: | 475-779 |
| Cow position: | chr23:25660146-25660450 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 240 |
| Conread position: | 489-771 |
| Cow position: | chr23:24654042-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 491-779 |
| Cow position: | chr23:25724116-25723828 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 525-780 |
| Cow position: | chr23:24547368-24547114 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 19 |
| Conread position: | 536-776 |
| Cow position: | chr23:24560919-24560678 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 9, 71 |
| Conread position: | 568-773 |
| Cow position: | chr23:24654037-24654242 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 636-780 |
| Cow position: | chr23:24560901-24560758 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 47, 6 |
| Conread position: | 642-780 |
| Cow position: | chr23:25660145-25660283 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 38, 56 |
| Conread position: | 778-1091 |
| Cow position: | chr23:25636258-25636565 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 0 |
Show alignments to all cow chromosomes.