Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8035I16.3 |
| Conread position: | 1-240 |
| Cow position: | chr28:9253376-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 1-324 |
| Cow position: | chr28:33210333-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 228, 298 |
| Conread position: | 1-475 |
| Cow position: | chr28:34679539-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 299 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 1-553 |
| Cow position: | chr28:34673376-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 343 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 33, 19 |
| Conread position: | 1-582 |
| Cow position: | chr28:11333780-11333196 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 364 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 221, 213 |
| Conread position: | 1-666 |
| Cow position: | chr28:7810285-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 213 |
| Conread position: | 1-680 |
| Cow position: | chr28:11333864-11333182 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 411 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 1-727 |
| Cow position: | chr28:7757605-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 215 |
| Conread position: | 1-757 |
| Cow position: | chr28:7758025-7758768 (view UCSC Genome Browser custom track) |
| Alignm length: | 765 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 215 |
| Conread position: | 1-771 |
| Cow position: | chr28:7757437-7758210 (view UCSC Genome Browser custom track) |
| Alignm length: | 780 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 213 |
| Conread position: | 1-778 |
| Cow position: | chr28:7757521-7758301 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 215 |
| Conread position: | 1-780 |
| Cow position: | chr28:9252790-9253570 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 102 |
| Conread position: | 3-239 |
| Cow position: | chr28:9290442-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 221, 31 |
| Conread position: | 3-353 |
| Cow position: | chr28:9253294-9253645 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 310, 0 |
| Conread position: | 3-770 |
| Cow position: | chr28:7757943-7758697 (view UCSC Genome Browser custom track) |
| Alignm length: | 773 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 211 |
| Conread position: | 4-754 |
| Cow position: | chr28:11333945-11333192 (view UCSC Genome Browser custom track) |
| Alignm length: | 766 |
| Alignm identity: | 460 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 220, 212 |
| Conread position: | 4-770 |
| Cow position: | chr28:9298758-9299510 (view UCSC Genome Browser custom track) |
| Alignm length: | 774 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 31-419 |
| Cow position: | chr28:7810558-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 289, 280 |
| Conread position: | 42-770 |
| Cow position: | chr28:9298963-9299675 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 31 |
| Conread position: | 42-772 |
| Cow position: | chr28:9252912-9253647 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 175 |
| Conread position: | 43-446 |
| Cow position: | chr28:34696143-34696546 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 181, 176 |
| Conread position: | 51-559 |
| Cow position: | chr28:34679571-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 25 |
| Conread position: | 51-564 |
| Cow position: | chr28:7758395-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 384 |
| Conread position: | 51-771 |
| Cow position: | chr28:9298721-9299427 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 97 |
| Conread position: | 51-779 |
| Cow position: | chr28:34695815-34696546 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 171 |
| Conread position: | 52-674 |
| Cow position: | chr28:9290076-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 132 |
| Conread position: | 54-796 |
| Cow position: | chr28:9298642-9299369 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 25 |
| Conread position: | 55-727 |
| Cow position: | chr28:34695903-34696578 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 68 |
| Conread position: | 55-739 |
| Cow position: | chr28:9298892-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 101 |
| Conread position: | 56-776 |
| Cow position: | chr28:9289910-9290629 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 41 |
| Conread position: | 61-776 |
| Cow position: | chr28:7757413-7758131 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 155 |
| Conread position: | 62-612 |
| Cow position: | chr28:34673353-34673906 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 343 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 42, 56 |
| Conread position: | 72-759 |
| Cow position: | chr28:11334213-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 43 |
| Conread position: | 83-750 |
| Cow position: | chr28:7810283-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 242 |
| Conread position: | 119-778 |
| Cow position: | chr28:11334250-11333588 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 70 |
| Conread position: | 120-776 |
| Cow position: | chr28:7756977-7757627 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 410 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 87, 49 |
| Conread position: | 122-779 |
| Cow position: | chr28:34695718-34696378 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 508 |
| Conread position: | 124-770 |
| Cow position: | chr28:7757392-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 261 |
| Conread position: | 127-778 |
| Cow position: | chr28:7757233-7757881 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 89 |
| Conread position: | 127-779 |
| Cow position: | chr28:9289819-9290465 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 400 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 228, 62 |
| Conread position: | 148-527 |
| Cow position: | chr28:33210228-33210611 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 246 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 301, 0 |
| Conread position: | 150-771 |
| Cow position: | chr28:7757334-7757958 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 156 |
| Conread position: | 167-771 |
| Cow position: | chr28:7810283-7810881 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 219 |
| Conread position: | 295-688 |
| Cow position: | chr28:34679497-34679109 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 295-777 |
| Cow position: | chr28:7810327-7810803 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 313 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 116, 100 |
| Conread position: | 295-793 |
| Cow position: | chr28:34673418-34673918 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 319 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 105, 100 |
| Conread position: | 400-773 |
| Cow position: | chr28:9298567-9298941 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 36, 100 |
| Conread position: | 400-779 |
| Cow position: | chr28:33210228-33210611 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 306 |
| Conread position: | 408-778 |
| Cow position: | chr28:34673363-34673736 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 130 |
| Conread position: | 460-770 |
| Cow position: | chr28:34679579-34679268 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 231, 33 |
| Conread position: | 563-792 |
| Cow position: | chr28:34673353-34673581 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 47, 57 |
| Conread position: | 588-773 |
| Cow position: | chr28:7810287-7810472 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 101, 110 |
Show alignments to all cow chromosomes.