Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8035I16.3 |
| Conread position: | 1-320 |
| Cow position: | chr7:42878583-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 311, 0 |
| Conread position: | 1-362 |
| Cow position: | chr7:1439912-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 30, 35 |
| Conread position: | 1-451 |
| Cow position: | chr7:18390351-18390801 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 279 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-518 |
| Cow position: | chr7:11600998-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 131 |
| Conread position: | 1-531 |
| Cow position: | chr7:1014960-1015495 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 446, 0 |
| Conread position: | 1-559 |
| Cow position: | chr7:42878835-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 191 |
| Conread position: | 1-568 |
| Cow position: | chr7:3180306-3180875 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 1-686 |
| Cow position: | chr7:1014792-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 98 |
| Conread position: | 1-687 |
| Cow position: | chr7:8325426-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 697 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 117 |
| Conread position: | 1-725 |
| Cow position: | chr7:42879003-42878276 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 385 |
| Conread position: | 1-771 |
| Cow position: | chr7:42879423-42878650 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 1-774 |
| Cow position: | chr7:8277785-8278559 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 126 |
| Conread position: | 1-776 |
| Cow position: | chr7:8277449-8278227 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 127 |
| Conread position: | 1-778 |
| Cow position: | chr7:3180054-3180832 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 387 |
| Conread position: | 1-778 |
| Cow position: | chr7:42879087-42878307 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 514 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 215 |
| Conread position: | 1-779 |
| Cow position: | chr7:1014546-1015321 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 102 |
| Conread position: | 1-779 |
| Cow position: | chr7:3179802-3180583 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 708 |
| Conread position: | 1-779 |
| Cow position: | chr7:3179886-3180667 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 530 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 518 |
| Conread position: | 1-779 |
| Cow position: | chr7:3179970-3180751 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 532 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 259 |
| Conread position: | 2-771 |
| Cow position: | chr7:8243241-8244010 (view UCSC Genome Browser custom track) |
| Alignm length: | 779 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 140 |
| Conread position: | 2-779 |
| Cow position: | chr7:18390016-18390796 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 107 |
| Conread position: | 3-770 |
| Cow position: | chr7:42879169-42878399 (view UCSC Genome Browser custom track) |
| Alignm length: | 772 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 436, 461 |
| Conread position: | 3-771 |
| Cow position: | chr7:42879253-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 778 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 49 |
| Conread position: | 4-641 |
| Cow position: | chr7:11601079-11600439 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 210 |
| Conread position: | 4-773 |
| Cow position: | chr7:8325093-8325865 (view UCSC Genome Browser custom track) |
| Alignm length: | 783 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 124 |
| Conread position: | 4-776 |
| Cow position: | chr7:8277704-8278477 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 34-687 |
| Cow position: | chr7:11601133-11600477 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 259 |
| Conread position: | 34-773 |
| Cow position: | chr7:1014411-1015147 (view UCSC Genome Browser custom track) |
| Alignm length: | 749 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 42-437 |
| Cow position: | chr7:1438311-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 113, 124 |
| Conread position: | 42-690 |
| Cow position: | chr7:8278078-8278720 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 396 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 164, 151 |
| Conread position: | 42-773 |
| Cow position: | chr7:3179759-3180493 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 422 |
| Conread position: | 42-779 |
| Cow position: | chr7:1014335-1015069 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 399, 323 |
| Conread position: | 44-772 |
| Cow position: | chr7:8243115-8243845 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 88 |
| Conread position: | 46-773 |
| Cow position: | chr7:8242950-8243678 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 9 |
| Conread position: | 46-773 |
| Cow position: | chr7:8324800-8325529 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 477 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 9 |
| Conread position: | 51-767 |
| Cow position: | chr7:1439457-1440176 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 131 |
| Conread position: | 51-779 |
| Cow position: | chr7:1014092-1014817 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 32 |
| Conread position: | 51-780 |
| Cow position: | chr7:1014674-1015406 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 398, 0 |
| Conread position: | 52-740 |
| Cow position: | chr7:8277920-8278609 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 48 |
| Conread position: | 55-576 |
| Cow position: | chr7:11434741-11434224 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 326 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 74, 51 |
| Conread position: | 55-770 |
| Cow position: | chr7:8324976-8325694 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 54 |
| Conread position: | 55-772 |
| Cow position: | chr7:8243210-8243929 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 69 |
| Conread position: | 55-772 |
| Cow position: | chr7:8325396-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 146 |
| Conread position: | 56-770 |
| Cow position: | chr7:1439546-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 42 |
| Conread position: | 60-772 |
| Cow position: | chr7:8277256-8277971 (view UCSC Genome Browser custom track) |
| Alignm length: | 723 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 44 |
| Conread position: | 60-776 |
| Cow position: | chr7:11434974-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 727 |
| Alignm identity: | 446 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 61-772 |
| Cow position: | chr7:11601190-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 720 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 129 |
| Conread position: | 73-771 |
| Cow position: | chr7:3179706-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 457 |
| Conread position: | 77-680 |
| Cow position: | chr7:1438096-1438700 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 361 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 74 |
| Conread position: | 78-773 |
| Cow position: | chr7:8242813-8243510 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 434 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 31 |
| Conread position: | 79-778 |
| Cow position: | chr7:42879261-42878559 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 137 |
| Conread position: | 100-780 |
| Cow position: | chr7:18389945-18390629 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 117 |
| Conread position: | 118-772 |
| Cow position: | chr7:1014246-1014894 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 321, 9 |
| Conread position: | 129-764 |
| Cow position: | chr7:1439451-1440089 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 143 |
| Conread position: | 131-778 |
| Cow position: | chr7:42879377-42878728 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 255 |
| Conread position: | 154-770 |
| Cow position: | chr7:1438089-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 378 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 86, 62 |
| Conread position: | 168-778 |
| Cow position: | chr7:42879424-42878811 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 113 |
| Conread position: | 230-773 |
| Cow position: | chr7:11601189-11600643 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 290 |
| Conread position: | 258-779 |
| Cow position: | chr7:11601243-11600721 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 37 |
| Conread position: | 279-770 |
| Cow position: | chr7:3179660-3180154 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 312-773 |
| Cow position: | chr7:8277256-8277720 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 307 |
| Conread position: | 403-777 |
| Cow position: | chr7:3179700-3180077 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 403-780 |
| Cow position: | chr7:11601184-11600804 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 40, 123 |
| Conread position: | 408-772 |
| Cow position: | chr7:8242807-8243174 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 44, 220 |
| Conread position: | 409-773 |
| Cow position: | chr7:8324742-8325109 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 41, 178 |
| Conread position: | 433-774 |
| Cow position: | chr7:1439419-1439767 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 26, 168 |
| Conread position: | 483-773 |
| Cow position: | chr7:8324735-8325025 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 137, 130 |
| Conread position: | 486-770 |
| Cow position: | chr7:8242804-8243088 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 182 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 217, 203 |
| Conread position: | 540-786 |
| Cow position: | chr7:1439445-1439689 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 70, 75 |
Show alignments to all cow chromosomes.