Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036G13.5 |
| Conread position: | 1190-1394 |
| Cow position: | chr12:39781171-39781374 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 19, 6 |
| Conread position: | 1192-1414 |
| Cow position: | chr12:18768907-18769125 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 190, 29 |
| Conread position: | 1194-1388 |
| Cow position: | chr12:7274541-7274727 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1195-1416 |
| Cow position: | chr12:40715881-40716097 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 1196-1413 |
| Cow position: | chr12:1223185-1223394 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1197-1391 |
| Cow position: | chr12:36109099-36109292 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 74, 180 |
| Conread position: | 1197-1398 |
| Cow position: | chr12:43671865-43671669 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 27, 86 |
| Conread position: | 1198-1395 |
| Cow position: | chr12:23734541-23734349 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 32, 84 |
| Conread position: | 1199-1410 |
| Cow position: | chr12:10763426-10763206 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 17, 58 |
| Conread position: | 1199-1413 |
| Cow position: | chr12:4583100-4582892 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1199-1416 |
| Cow position: | chr12:18966595-18966810 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 173 |
| Conread position: | 1200-1355 |
| Cow position: | chr12:24681976-24681823 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 135, 21 |
| Conread position: | 1200-1416 |
| Cow position: | chr12:29448804-29448591 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 1200-1416 |
| Cow position: | chr12:31198925-31198710 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 45 |
| Conread position: | 1201-1335 |
| Cow position: | chr12:38096282-38096147 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 102 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1201-1390 |
| Cow position: | chr12:15984591-15984773 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 1201-1392 |
| Cow position: | chr12:34090279-34090096 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1201-1412 |
| Cow position: | chr12:5797409-5797609 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 21, 55 |
| Conread position: | 1202-1414 |
| Cow position: | chr12:1505175-1504969 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 17, 64 |
| Conread position: | 1203-1412 |
| Cow position: | chr12:1333392-1333178 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1203-1412 |
| Cow position: | chr12:29691041-29691245 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 1203-1416 |
| Cow position: | chr12:18094046-18093837 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 99, 120 |
| Conread position: | 1203-1416 |
| Cow position: | chr12:40931460-40931668 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1204-1372 |
| Cow position: | chr12:44391761-44391596 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 152, 22 |
| Conread position: | 1204-1404 |
| Cow position: | chr12:34465844-34466049 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 78, 111 |
| Conread position: | 1204-1415 |
| Cow position: | chr12:17263009-17262800 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 31, 20 |
| Conread position: | 1205-1410 |
| Cow position: | chr12:44908169-44907966 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 128, 17 |
| Conread position: | 1205-1412 |
| Cow position: | chr12:34161575-34161361 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 69, 16 |
| Conread position: | 1206-1395 |
| Cow position: | chr12:16205876-16205692 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 94, 16 |
| Conread position: | 1206-1410 |
| Cow position: | chr12:15230667-15230867 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 128, 41 |
| Conread position: | 1206-1411 |
| Cow position: | chr12:47486985-47486780 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 1206-1416 |
| Cow position: | chr12:17109744-17109946 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1207-1412 |
| Cow position: | chr12:30413787-30414000 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 1208-1407 |
| Cow position: | chr12:10846506-10846695 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1208-1411 |
| Cow position: | chr12:45225838-45226040 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 59, 75 |
| Conread position: | 1208-1412 |
| Cow position: | chr12:9229346-9229553 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 105 |
| Conread position: | 1208-1413 |
| Cow position: | chr12:5497679-5497875 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1208-1416 |
| Cow position: | chr12:1883388-1883585 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1208-1416 |
| Cow position: | chr12:7645659-7645859 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1209-1416 |
| Cow position: | chr12:3816637-3816428 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 121, 162 |
| Conread position: | 1210-1413 |
| Cow position: | chr12:25312226-25312422 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1210-1416 |
| Cow position: | chr12:7996559-7996357 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 11 |
| Conread position: | 1210-1416 |
| Cow position: | chr12:25619229-25619428 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 127, 82 |
| Conread position: | 1211-1412 |
| Cow position: | chr12:34849711-34849904 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 191, 42 |
| Conread position: | 1211-1412 |
| Cow position: | chr12:34852348-34852541 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 191, 42 |
| Conread position: | 1212-1412 |
| Cow position: | chr12:42478157-42477959 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 121, 68 |
| Conread position: | 1212-1416 |
| Cow position: | chr12:25606854-25606648 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 1214-1401 |
| Cow position: | chr12:14855958-14855772 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 25, 153 |
| Conread position: | 1214-1412 |
| Cow position: | chr12:5658602-5658799 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 162, 7 |
| Conread position: | 1215-1367 |
| Cow position: | chr12:32264262-32264413 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 119, 6 |
| Conread position: | 1215-1407 |
| Cow position: | chr12:11080956-11081147 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 176, 6 |
| Conread position: | 1215-1412 |
| Cow position: | chr12:5680827-5680630 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 92, 6 |
| Conread position: | 1215-1412 |
| Cow position: | chr12:47804298-47804104 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 92, 65 |
| Conread position: | 1215-1413 |
| Cow position: | chr12:23983807-23983609 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 13 |
| Conread position: | 1215-1414 |
| Cow position: | chr12:42918608-42918421 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr12:27055747-27055551 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 121, 28 |
| Conread position: | 1216-1396 |
| Cow position: | chr12:25933824-25933648 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1216-1416 |
| Cow position: | chr12:30065076-30064883 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1218-1403 |
| Cow position: | chr12:24529245-24529423 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 80 |
| Conread position: | 1220-1409 |
| Cow position: | chr12:34242186-34242375 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1221-1416 |
| Cow position: | chr12:41642570-41642375 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 149, 96 |
| Conread position: | 1221-1416 |
| Cow position: | chr12:48425848-48425658 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1222-1408 |
| Cow position: | chr12:12331373-12331557 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 111, 6 |
| Conread position: | 1222-1415 |
| Cow position: | chr12:44057654-44057464 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 33, 91 |
| Conread position: | 1224-1400 |
| Cow position: | chr12:16850781-16850954 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 110, 5 |
| Conread position: | 1227-1416 |
| Cow position: | chr12:16543446-16543638 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 68, 17 |
| Conread position: | 1227-1416 |
| Cow position: | chr12:24559491-24559301 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 150 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1227-1416 |
| Cow position: | chr12:30596601-30596410 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 123, 0 |
| Conread position: | 1228-1369 |
| Cow position: | chr12:28017177-28017036 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1228-1416 |
| Cow position: | chr12:5735278-5735450 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 1229-1373 |
| Cow position: | chr12:8980924-8981067 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 105, 15 |
| Conread position: | 1229-1411 |
| Cow position: | chr12:31258137-31257968 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1231-1404 |
| Cow position: | chr12:14325146-14325311 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1236-1416 |
| Cow position: | chr12:28559425-28559242 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 1239-1388 |
| Cow position: | chr12:27038622-27038770 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 1240-1416 |
| Cow position: | chr12:31528736-31528912 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 145 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1243-1369 |
| Cow position: | chr12:21829190-21829064 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 9, 114 |
| Conread position: | 1244-1409 |
| Cow position: | chr12:45541823-45541662 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 1245-1407 |
| Cow position: | chr12:32413630-32413466 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 137 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 144, 0 |
| Conread position: | 1248-1416 |
| Cow position: | chr12:28831192-28831024 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 96 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1254-1401 |
| Cow position: | chr12:24204207-24204351 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 112 |
| Conread position: | 1254-1412 |
| Cow position: | chr12:13657638-13657796 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1270-1397 |
| Cow position: | chr12:39754372-39754249 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 93, 0 |
Show alignments to all cow chromosomes.