Cow genome map

Conread name: Ss1.1-Pig4-TMW8036G13.5

Conread position: 1181-1398
Cow position: chr14:28565136-28565342 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 194, 57

Conread position: 1192-1416
Cow position: chr14:13928287-13928064 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 165
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 27, 40

Conread position: 1193-1392
Cow position: chr14:47693536-47693731 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 119, 0

Conread position: 1198-1366
Cow position: chr14:24838545-24838375 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 150, 94

Conread position: 1199-1374
Cow position: chr14:29481541-29481366 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 130
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 162

Conread position: 1199-1413
Cow position: chr14:21017959-21018167 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 158
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 16, 30

Conread position: 1199-1416
Cow position: chr14:30179685-30179460 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 139, 22

Conread position: 1200-1416
Cow position: chr14:2189480-2189693 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 0

Conread position: 1200-1416
Cow position: chr14:10692417-10692208 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 162
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 24, 52

Conread position: 1200-1416
Cow position: chr14:28565323-28565530 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 159
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 21, 0

Conread position: 1200-1416
Cow position: chr14:47551429-47551218 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 158
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 55, 0

Conread position: 1200-1416
Cow position: chr14:47604450-47604239 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 50, 0

Conread position: 1201-1358
Cow position: chr14:21273435-21273595 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 20

Conread position: 1201-1390
Cow position: chr14:13809782-13809975 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 50, 27

Conread position: 1201-1416
Cow position: chr14:21691429-21691215 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 168
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 135, 20

Conread position: 1201-1416
Cow position: chr14:44861385-44861176 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 20, 0

Conread position: 1202-1416
Cow position: chr14:7582594-7582393 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 25, 0

Conread position: 1203-1377
Cow position: chr14:47600555-47600388 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 1203-1392
Cow position: chr14:20795624-20795809 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 47

Conread position: 1203-1397
Cow position: chr14:9065739-9065934 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 13, 69

Conread position: 1203-1410
Cow position: chr14:6582850-6583051 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 23, 0

Conread position: 1204-1367
Cow position: chr14:8518134-8517977 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 124
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 1204-1414
Cow position: chr14:39058432-39058638 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 167
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 124, 18

Conread position: 1205-1397
Cow position: chr14:36081065-36080877 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 158, 0

Conread position: 1205-1416
Cow position: chr14:22459999-22459805 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 1205-1416
Cow position: chr14:23107170-23107384 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 53, 24

Conread position: 1206-1330
Cow position: chr14:17212610-17212486 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1206-1416
Cow position: chr14:15990075-15990276 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 127, 76

Conread position: 1206-1416
Cow position: chr14:18979343-18979141 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 13, 65

Conread position: 1206-1416
Cow position: chr14:20865457-20865260 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 157
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 37, 15

Conread position: 1206-1416
Cow position: chr14:26960563-26960357 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 157
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 198, 43

Conread position: 1208-1399
Cow position: chr14:26153415-26153226 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 155
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 175, 13

Conread position: 1208-1410
Cow position: chr14:6985098-6984911 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 153
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 13, 0

Conread position: 1208-1413
Cow position: chr14:25386034-25385829 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 154
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 9, 71

Conread position: 1209-1371
Cow position: chr14:43566025-43565863 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 1209-1397
Cow position: chr14:37624914-37624732 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 12, 0

Conread position: 1209-1416
Cow position: chr14:37679148-37678943 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 1211-1406
Cow position: chr14:20701961-20701769 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 123, 155

Conread position: 1211-1407
Cow position: chr14:35700286-35700476 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 144
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 10, 0

Conread position: 1212-1414
Cow position: chr14:28605089-28605291 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 1212-1416
Cow position: chr14:19023041-19022838 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 162
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 10, 61

Conread position: 1212-1416
Cow position: chr14:26493729-26493934 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 80, 64

Conread position: 1213-1416
Cow position: chr14:29860736-29860927 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 8, 0

Conread position: 1215-1347
Cow position: chr14:7613922-7614053 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 1215-1365
Cow position: chr14:10114827-10114973 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 39, 0

Conread position: 1215-1366
Cow position: chr14:5677224-5677370 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 115
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 1215-1399
Cow position: chr14:44031894-44032079 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 123, 0

Conread position: 1215-1408
Cow position: chr14:41531802-41531612 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 119, 6

Conread position: 1215-1409
Cow position: chr14:23050752-23050566 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 124, 68

Conread position: 1215-1410
Cow position: chr14:38355049-38355238 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 119, 57

Conread position: 1215-1412
Cow position: chr14:7813707-7813516 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 144
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 95, 0

Conread position: 1215-1412
Cow position: chr14:12954534-12954328 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 143
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 67, 0

Conread position: 1215-1413
Cow position: chr14:27060324-27060510 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 146
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 189, 6

Conread position: 1215-1414
Cow position: chr14:10906591-10906789 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 148, 13

Conread position: 1215-1415
Cow position: chr14:6441767-6441968 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 154
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 121, 0

Conread position: 1215-1416
Cow position: chr14:8488057-8488246 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 188, 6

Conread position: 1215-1416
Cow position: chr14:20429434-20429640 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 36, 198

Conread position: 1215-1416
Cow position: chr14:26108493-26108693 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 163
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 1215-1416
Cow position: chr14:27103945-27104139 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 147
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 16, 0

Conread position: 1215-1416
Cow position: chr14:43031656-43031857 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 152
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1215-1416
Cow position: chr14:47519892-47519692 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 156
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 96, 0

Conread position: 1220-1386
Cow position: chr14:26805187-26805020 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 129
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 87, 91

Conread position: 1221-1384
Cow position: chr14:37333566-37333726 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 125
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 31, 54

Conread position: 1221-1402
Cow position: chr14:11615356-11615174 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 126
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 113, 0

Conread position: 1221-1413
Cow position: chr14:23008055-23008235 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 40, 0

Conread position: 1221-1416
Cow position: chr14:33553061-33553244 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 23

Conread position: 1222-1376
Cow position: chr14:8875177-8875028 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 1222-1408
Cow position: chr14:26448630-26448800 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 6, 0

Conread position: 1222-1416
Cow position: chr14:31784846-31785025 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 143
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 0

Conread position: 1227-1387
Cow position: chr14:38688361-38688205 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 139, 55

Conread position: 1227-1415
Cow position: chr14:45849345-45849162 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 140
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 106, 139

Conread position: 1227-1416
Cow position: chr14:6789257-6789443 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 132
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 65, 0

Conread position: 1228-1382
Cow position: chr14:25458215-25458370 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 7, 25

Conread position: 1228-1410
Cow position: chr14:47973857-47974035 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 173, 134

Conread position: 1228-1412
Cow position: chr14:21369241-21369420 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 31, 46

Conread position: 1228-1415
Cow position: chr14:7648147-7647959 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 154
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 1229-1407
Cow position: chr14:25639897-25639720 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 105, 77

Conread position: 1229-1416
Cow position: chr14:12559603-12559420 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 148
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 180, 43

Conread position: 1231-1369
Cow position: chr14:20284029-20284168 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 113
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 117, 0

Conread position: 1231-1401
Cow position: chr14:47027496-47027326 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 121
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 102, 115

Conread position: 1233-1391
Cow position: chr14:10935827-10935674 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 1233-1416
Cow position: chr14:20045429-20045611 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 146
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 29, 0

Conread position: 1240-1376
Cow position: chr14:6582723-6582862 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 115
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 30, 11

Conread position: 1243-1370
Cow position: chr14:16969204-16969080 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 99
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 1244-1369
Cow position: chr14:10936171-10936295 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 103
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 18

Conread position: 1251-1395
Cow position: chr14:46393096-46393235 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 1254-1383
Cow position: chr14:5400483-5400613 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 1255-1416
Cow position: chr14:21084240-21084401 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 132
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 1261-1416
Cow position: chr14:45515669-45515518 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 1264-1414
Cow position: chr14:44595215-44595070 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 1269-1416
Cow position: chr14:20435305-20435452 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1270-1404
Cow position: chr14:46962465-46962594 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 1272-1412
Cow position: chr14:28327206-28327068 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 20, 0

Conread position: 1278-1415
Cow position: chr14:31399518-31399651 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 111
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 87, 0

Conread position: 1294-1416
Cow position: chr14:25378557-25378435 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 99
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.