Cow genome map

Conread name: Ss1.1-Pig4-TMW8036G13.5

Conread position: 1188-1391
Cow position: chr18:48717770-48717964 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 186, 33

Conread position: 1194-1409
Cow position: chr18:51537510-51537724 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 167
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 17, 83

Conread position: 1195-1416
Cow position: chr18:51271576-51271804 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 171
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 124, 26

Conread position: 1196-1416
Cow position: chr18:51587379-51587593 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 165
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 87, 0

Conread position: 1198-1416
Cow position: chr18:16448705-16448506 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 1199-1376
Cow position: chr18:4378931-4378756 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 95, 0

Conread position: 1199-1416
Cow position: chr18:16298275-16298054 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 1199-1416
Cow position: chr18:23714706-23714935 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 176
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 82, 22

Conread position: 1199-1416
Cow position: chr18:26373086-26372869 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1200-1377
Cow position: chr18:29949909-29949737 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 131
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 69, 0

Conread position: 1200-1391
Cow position: chr18:28297701-28297889 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 111, 29

Conread position: 1200-1409
Cow position: chr18:6075225-6075440 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 155
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 1200-1411
Cow position: chr18:55696863-55697066 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 156
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 1200-1412
Cow position: chr18:45961108-45961319 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 171
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 70

Conread position: 1200-1416
Cow position: chr18:6158073-6157866 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 53, 0

Conread position: 1201-1400
Cow position: chr18:39503537-39503730 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 159, 111

Conread position: 1201-1414
Cow position: chr18:15689443-15689237 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 133, 22

Conread position: 1202-1365
Cow position: chr18:28795000-28794837 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 33

Conread position: 1202-1416
Cow position: chr18:40893436-40893225 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 154
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 182, 0

Conread position: 1203-1416
Cow position: chr18:25970485-25970683 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 157
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 47, 0

Conread position: 1203-1416
Cow position: chr18:26334643-26334862 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 159
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 20, 96

Conread position: 1204-1354
Cow position: chr18:14520194-14520046 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 17, 48

Conread position: 1204-1388
Cow position: chr18:35608085-35607903 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 1205-1394
Cow position: chr18:48036978-48036789 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 18, 80

Conread position: 1205-1409
Cow position: chr18:46320823-46321021 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 35

Conread position: 1205-1412
Cow position: chr18:37331370-37331572 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 16, 0

Conread position: 1206-1416
Cow position: chr18:40202652-40202856 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 151
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 146, 106

Conread position: 1207-1408
Cow position: chr18:15831446-15831636 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 157
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 14, 0

Conread position: 1207-1411
Cow position: chr18:10101642-10101446 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 14, 0

Conread position: 1208-1412
Cow position: chr18:20126951-20127154 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 159
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 126, 40

Conread position: 1208-1413
Cow position: chr18:30566402-30566603 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 41, 158

Conread position: 1208-1414
Cow position: chr18:43712202-43711999 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 166
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 159, 13

Conread position: 1209-1406
Cow position: chr18:51486313-51486505 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 1209-1411
Cow position: chr18:9155044-9154841 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 72, 12

Conread position: 1209-1412
Cow position: chr18:1190566-1190765 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 152
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 138, 157

Conread position: 1209-1413
Cow position: chr18:22411456-22411660 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 158
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 124, 73

Conread position: 1209-1416
Cow position: chr18:38126294-38126499 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 193, 100

Conread position: 1210-1416
Cow position: chr18:21575131-21574934 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 144
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 129, 62

Conread position: 1211-1410
Cow position: chr18:2438614-2438808 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 151
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 125, 10

Conread position: 1211-1411
Cow position: chr18:24363911-24364102 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 107, 11

Conread position: 1211-1416
Cow position: chr18:19364088-19363888 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 165
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 9, 74

Conread position: 1213-1398
Cow position: chr18:4040318-4040141 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 1213-1410
Cow position: chr18:35797762-35797578 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 154
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 38, 0

Conread position: 1213-1414
Cow position: chr18:51298631-51298433 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 105, 0

Conread position: 1214-1409
Cow position: chr18:35767318-35767129 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 149
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 122, 7

Conread position: 1215-1369
Cow position: chr18:7409155-7409306 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 6, 0

Conread position: 1215-1391
Cow position: chr18:24221717-24221548 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 129
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 13, 0

Conread position: 1215-1409
Cow position: chr18:44493336-44493527 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 148
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 169, 0

Conread position: 1215-1411
Cow position: chr18:34324801-34324997 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 52, 6

Conread position: 1215-1412
Cow position: chr18:26842949-26843146 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 96, 15

Conread position: 1215-1412
Cow position: chr18:29796281-29796476 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 144
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 92, 13

Conread position: 1215-1416
Cow position: chr18:16841901-16842111 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 13, 0

Conread position: 1215-1416
Cow position: chr18:43554931-43555126 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 9, 39

Conread position: 1215-1416
Cow position: chr18:46873720-46873912 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 155
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 6, 0

Conread position: 1217-1334
Cow position: chr18:33248352-33248235 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 92
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1218-1411
Cow position: chr18:248668-248859 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 115, 176

Conread position: 1221-1332
Cow position: chr18:15267846-15267957 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1221-1363
Cow position: chr18:51241169-51241027 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 112, 61

Conread position: 1221-1402
Cow position: chr18:56186286-56186472 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 129, 19

Conread position: 1221-1414
Cow position: chr18:50700828-50700638 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 157
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 95, 0

Conread position: 1221-1416
Cow position: chr18:4578344-4578537 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 154
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 30, 45

Conread position: 1221-1416
Cow position: chr18:5756122-5755930 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 139, 0

Conread position: 1221-1416
Cow position: chr18:11362393-11362202 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 143, 0

Conread position: 1221-1416
Cow position: chr18:33842941-33843137 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 153
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 166, 0

Conread position: 1231-1416
Cow position: chr18:42061209-42061025 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 150
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 91, 0

Conread position: 1233-1416
Cow position: chr18:16726780-16726599 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 143
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 148, 0

Conread position: 1235-1405
Cow position: chr18:21706054-21706221 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 139
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 166, 147

Conread position: 1236-1416
Cow position: chr18:43113820-43113994 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 0

Conread position: 1237-1416
Cow position: chr18:24855716-24855895 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1242-1416
Cow position: chr18:32774001-32773827 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 132
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 92, 80

Conread position: 1243-1416
Cow position: chr18:32909169-32908998 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 138
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 148, 72

Conread position: 1243-1416
Cow position: chr18:48458796-48458623 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 139
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 1244-1416
Cow position: chr18:44400567-44400399 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 121, 0

Conread position: 1245-1386
Cow position: chr18:21094985-21095126 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 123, 17

Conread position: 1247-1416
Cow position: chr18:10687476-10687648 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 125
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 1251-1369
Cow position: chr18:51412458-51412341 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 104, 0

Conread position: 1251-1373
Cow position: chr18:44408532-44408408 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 101
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 114, 0

Conread position: 1252-1414
Cow position: chr18:21681866-21682022 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 21, 0

Conread position: 1253-1371
Cow position: chr18:39210902-39211021 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 97
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 115, 0

Conread position: 1256-1412
Cow position: chr18:16134205-16134360 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 121
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 23

Conread position: 1257-1413
Cow position: chr18:23425026-23424870 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 146, 103

Conread position: 1258-1416
Cow position: chr18:33275396-33275245 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 1264-1416
Cow position: chr18:25002789-25002940 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 58, 0

Conread position: 1265-1409
Cow position: chr18:1495403-1495259 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 1272-1416
Cow position: chr18:34007038-34006901 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 26, 0

Conread position: 1272-1416
Cow position: chr18:35360060-35359918 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 9e-23
Alignm gaps (pig, cow): 62, 126

Conread position: 1280-1416
Cow position: chr18:32517268-32517400 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 111
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 84, 0

Conread position: 1290-1416
Cow position: chr18:213462-213588 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 101
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1302-1416
Cow position: chr18:21176250-21176138 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 33, 69

Conread position: 1305-1416
Cow position: chr18:38793827-38793936 (view UCSC Genome Browser custom track)
Alignm length: 112
Alignm identity: 91
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 1314-1416
Cow position: chr18:51002488-51002589 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 85
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 49, 0

Show alignments to all cow chromosomes.