Cow genome map

Conread name: Ss1.1-Pig4-TMW8036G13.5

Conread position: 1181-1416
Cow position: chr21:47822986-47823228 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 178
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 69, 15

Conread position: 1193-1416
Cow position: chr21:13358594-13358370 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 170
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 190, 6

Conread position: 1197-1396
Cow position: chr21:6058385-6058577 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 1197-1410
Cow position: chr21:15741819-15742038 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 169
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 24, 0

Conread position: 1197-1412
Cow position: chr21:18135610-18135823 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 95, 23

Conread position: 1198-1341
Cow position: chr21:41515061-41514914 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 29, 0

Conread position: 1198-1380
Cow position: chr21:34648927-34649109 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 135, 47

Conread position: 1198-1402
Cow position: chr21:4276340-4276543 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 124, 0

Conread position: 1198-1411
Cow position: chr21:9353713-9353497 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 167
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 24, 0

Conread position: 1198-1412
Cow position: chr21:23800870-23801079 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 161
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 136, 46

Conread position: 1199-1397
Cow position: chr21:23397403-23397598 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 145
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 85, 159

Conread position: 1199-1409
Cow position: chr21:44754527-44754726 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 155
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 128, 0

Conread position: 1199-1416
Cow position: chr21:34564955-34565164 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 173
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 25, 53

Conread position: 1200-1410
Cow position: chr21:31004412-31004621 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 158
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 20, 168

Conread position: 1200-1411
Cow position: chr21:12087854-12087639 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 170
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 137, 26

Conread position: 1200-1411
Cow position: chr21:48290795-48291002 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 23, 74

Conread position: 1200-1416
Cow position: chr21:8671652-8671442 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 163
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 80, 0

Conread position: 1201-1388
Cow position: chr21:30149986-30150167 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 26, 0

Conread position: 1201-1395
Cow position: chr21:2413308-2413119 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 134, 27

Conread position: 1201-1403
Cow position: chr21:7823611-7823420 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 142
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 1201-1412
Cow position: chr21:8207036-8206821 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 81, 116

Conread position: 1201-1416
Cow position: chr21:11675793-11676004 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 165
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 164, 0

Conread position: 1202-1367
Cow position: chr21:23974017-23974181 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 90, 0

Conread position: 1202-1411
Cow position: chr21:45356092-45355883 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 155
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 105, 19

Conread position: 1202-1412
Cow position: chr21:38901042-38900823 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 157
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 21, 118

Conread position: 1202-1416
Cow position: chr21:49649877-49649679 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 162
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 51

Conread position: 1203-1416
Cow position: chr21:7483097-7483304 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 145, 37

Conread position: 1203-1416
Cow position: chr21:8282521-8282321 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 162
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 140, 0

Conread position: 1203-1416
Cow position: chr21:25286772-25286562 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 165
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 115, 0

Conread position: 1203-1416
Cow position: chr21:45923405-45923607 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 194, 73

Conread position: 1204-1408
Cow position: chr21:21140760-21140572 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 150
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 1204-1416
Cow position: chr21:3254409-3254197 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 155
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 129, 148

Conread position: 1205-1369
Cow position: chr21:30053165-30053329 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 132
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 145, 23

Conread position: 1205-1413
Cow position: chr21:23397595-23397798 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 163
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 12, 49

Conread position: 1205-1413
Cow position: chr21:47715290-47715498 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 177, 16

Conread position: 1205-1416
Cow position: chr21:36371735-36371533 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 164
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 16, 0

Conread position: 1206-1411
Cow position: chr21:6316465-6316268 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 147
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 0

Conread position: 1206-1412
Cow position: chr21:27480698-27480498 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 103, 22

Conread position: 1206-1416
Cow position: chr21:33947001-33947204 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 1207-1412
Cow position: chr21:9939938-9940139 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 126, 16

Conread position: 1208-1416
Cow position: chr21:8420870-8420671 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 60, 13

Conread position: 1208-1416
Cow position: chr21:21181429-21181224 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 150
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 20, 0

Conread position: 1208-1416
Cow position: chr21:31576741-31576542 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 165
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 35, 0

Conread position: 1209-1377
Cow position: chr21:49661588-49661751 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 129, 42

Conread position: 1209-1411
Cow position: chr21:39528760-39528563 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 115, 12

Conread position: 1210-1396
Cow position: chr21:17428747-17428561 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 130, 112

Conread position: 1210-1398
Cow position: chr21:17806888-17807070 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 150
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 41, 0

Conread position: 1210-1410
Cow position: chr21:25800644-25800451 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 143
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 1210-1415
Cow position: chr21:4099117-4098919 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 124, 43

Conread position: 1210-1416
Cow position: chr21:49654319-49654116 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 99, 73

Conread position: 1211-1407
Cow position: chr21:37235632-37235439 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 123, 27

Conread position: 1212-1414
Cow position: chr21:13417988-13418183 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 11, 40

Conread position: 1212-1416
Cow position: chr21:13755030-13754831 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 123, 30

Conread position: 1213-1413
Cow position: chr21:4723731-4723529 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 10, 0

Conread position: 1214-1386
Cow position: chr21:41197805-41197970 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 134
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 32, 0

Conread position: 1214-1396
Cow position: chr21:47639883-47640065 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 39, 23

Conread position: 1214-1416
Cow position: chr21:46607346-46607541 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 120, 101

Conread position: 1215-1371
Cow position: chr21:699051-698898 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 102, 0

Conread position: 1215-1388
Cow position: chr21:26147323-26147151 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 118, 6

Conread position: 1215-1396
Cow position: chr21:22352991-22353172 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 119, 104

Conread position: 1215-1398
Cow position: chr21:37120965-37121149 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 144
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 8, 80

Conread position: 1215-1411
Cow position: chr21:24674961-24674770 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 0

Conread position: 1215-1412
Cow position: chr21:31662712-31662516 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 148
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 119, 27

Conread position: 1215-1416
Cow position: chr21:13737293-13737097 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 124, 67

Conread position: 1215-1416
Cow position: chr21:18941588-18941789 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 159
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 119, 104

Conread position: 1215-1416
Cow position: chr21:31662245-31662049 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 161
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 38, 0

Conread position: 1216-1387
Cow position: chr21:22398393-22398236 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 34, 0

Conread position: 1216-1391
Cow position: chr21:21223526-21223352 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 124
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 117, 64

Conread position: 1216-1400
Cow position: chr21:12301266-12301450 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 119, 76

Conread position: 1221-1387
Cow position: chr21:7187027-7186874 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 1221-1412
Cow position: chr21:34740085-34739893 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 137
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 112, 0

Conread position: 1221-1413
Cow position: chr21:15239517-15239331 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 32, 0

Conread position: 1221-1413
Cow position: chr21:32574961-32574777 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 136
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 172, 90

Conread position: 1221-1416
Cow position: chr21:23768104-23767916 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 15, 0

Conread position: 1221-1416
Cow position: chr21:23786265-23786077 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 145
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 1221-1416
Cow position: chr21:39509149-39509341 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 150
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 77, 0

Conread position: 1227-1375
Cow position: chr21:44220599-44220449 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 75, 0

Conread position: 1227-1401
Cow position: chr21:46242006-46242177 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 129
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 106, 102

Conread position: 1227-1416
Cow position: chr21:18379077-18378888 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 30, 130

Conread position: 1229-1416
Cow position: chr21:19859938-19860122 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 142
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 22, 0

Conread position: 1237-1359
Cow position: chr21:48802288-48802166 (view UCSC Genome Browser custom track)
Alignm length: 123
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 1240-1402
Cow position: chr21:35997393-35997235 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 132
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 126, 0

Conread position: 1242-1410
Cow position: chr21:18782450-18782290 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 40, 0

Conread position: 1243-1413
Cow position: chr21:37718230-37718394 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 9, 54

Conread position: 1243-1416
Cow position: chr21:26753709-26753536 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 135
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 91, 30

Conread position: 1261-1385
Cow position: chr21:44789154-44789278 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 102
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 1262-1385
Cow position: chr21:16836750-16836876 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 99
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 1262-1404
Cow position: chr21:13256314-13256452 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 118
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 139, 63

Conread position: 1266-1409
Cow position: chr21:37848419-37848276 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 40, 104

Conread position: 1267-1399
Cow position: chr21:24698675-24698543 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 111
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 1274-1392
Cow position: chr21:9588411-9588299 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 97
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 0

Conread position: 1279-1411
Cow position: chr21:1885608-1885740 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 100
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1307-1405
Cow position: chr21:18952817-18952717 (view UCSC Genome Browser custom track)
Alignm length: 101
Alignm identity: 87
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 29, 0

Show alignments to all cow chromosomes.