Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036G13.5 |
| Conread position: | 1194-1412 |
| Cow position: | chr23:23904122-23904340 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 121, 27 |
| Conread position: | 1195-1412 |
| Cow position: | chr23:18821182-18821393 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 1196-1403 |
| Cow position: | chr23:16237060-16237253 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 62 |
| Conread position: | 1197-1355 |
| Cow position: | chr23:26067292-26067137 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 140, 18 |
| Conread position: | 1198-1351 |
| Cow position: | chr23:18967686-18967839 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1198-1388 |
| Cow position: | chr23:15070964-15071146 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 94, 23 |
| Conread position: | 1199-1380 |
| Cow position: | chr23:21782279-21782455 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 173, 83 |
| Conread position: | 1199-1416 |
| Cow position: | chr23:1717343-1717565 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1199-1416 |
| Cow position: | chr23:19636061-19636274 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 57, 87 |
| Conread position: | 1199-1416 |
| Cow position: | chr23:36082786-36082566 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 1201-1375 |
| Cow position: | chr23:33928006-33927832 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 133, 20 |
| Conread position: | 1201-1383 |
| Cow position: | chr23:19981484-19981668 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1201-1416 |
| Cow position: | chr23:37223875-37224082 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1202-1391 |
| Cow position: | chr23:12366271-12366459 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 20, 85 |
| Conread position: | 1202-1412 |
| Cow position: | chr23:5603080-5603297 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 79, 116 |
| Conread position: | 1202-1415 |
| Cow position: | chr23:5389897-5389686 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 1203-1403 |
| Cow position: | chr23:11564182-11564375 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1203-1405 |
| Cow position: | chr23:347554-347751 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 161 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 194, 18 |
| Conread position: | 1203-1416 |
| Cow position: | chr23:21866935-21866726 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1204-1416 |
| Cow position: | chr23:11434067-11434273 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 1205-1408 |
| Cow position: | chr23:17092306-17092505 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1205-1409 |
| Cow position: | chr23:21275824-21276030 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 166 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 160, 46 |
| Conread position: | 1205-1410 |
| Cow position: | chr23:4956215-4956015 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 18, 162 |
| Conread position: | 1207-1416 |
| Cow position: | chr23:15872503-15872710 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 116, 24 |
| Conread position: | 1208-1404 |
| Cow position: | chr23:11750942-11751139 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 99, 103 |
| Conread position: | 1208-1404 |
| Cow position: | chr23:17000889-17000703 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1209-1390 |
| Cow position: | chr23:30256056-30255871 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 73, 12 |
| Conread position: | 1209-1415 |
| Cow position: | chr23:23191973-23192163 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1209-1416 |
| Cow position: | chr23:7611450-7611252 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1210-1392 |
| Cow position: | chr23:9812048-9812223 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 1210-1403 |
| Cow position: | chr23:26861621-26861439 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1210-1412 |
| Cow position: | chr23:40891552-40891350 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 124, 11 |
| Conread position: | 1212-1384 |
| Cow position: | chr23:28701175-28701003 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1212-1400 |
| Cow position: | chr23:20388457-20388651 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 1213-1409 |
| Cow position: | chr23:30308088-30307898 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 188, 15 |
| Conread position: | 1213-1416 |
| Cow position: | chr23:8929953-8930152 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1214-1411 |
| Cow position: | chr23:14126749-14126559 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1214-1416 |
| Cow position: | chr23:13360011-13359811 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 160 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 37, 7 |
| Conread position: | 1214-1416 |
| Cow position: | chr23:26217740-26217549 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1215-1402 |
| Cow position: | chr23:24411191-24411003 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 92, 96 |
| Conread position: | 1215-1410 |
| Cow position: | chr23:28721052-28721243 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 100 |
| Conread position: | 1215-1411 |
| Cow position: | chr23:18326988-18326798 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1215-1412 |
| Cow position: | chr23:26051224-26051026 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 92, 102 |
| Conread position: | 1215-1416 |
| Cow position: | chr23:14840332-14840526 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr23:16793765-16793570 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr23:20171765-20171563 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 118, 6 |
| Conread position: | 1215-1416 |
| Cow position: | chr23:20585515-20585714 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 146 |
| Conread position: | 1215-1416 |
| Cow position: | chr23:21660140-21659930 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 169 |
| Conread position: | 1215-1416 |
| Cow position: | chr23:21847940-21847738 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr23:22660403-22660598 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 8, 98 |
| Conread position: | 1215-1416 |
| Cow position: | chr23:38941806-38941606 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 156 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1216-1362 |
| Cow position: | chr23:30735967-30736109 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1216-1414 |
| Cow position: | chr23:22272293-22272493 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 1218-1416 |
| Cow position: | chr23:29272292-29272099 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1221-1412 |
| Cow position: | chr23:19774946-19774756 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 86, 41 |
| Conread position: | 1222-1384 |
| Cow position: | chr23:1552786-1552631 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1227-1409 |
| Cow position: | chr23:35155547-35155366 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 107, 118 |
| Conread position: | 1229-1416 |
| Cow position: | chr23:28894784-28894970 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 118, 132 |
| Conread position: | 1230-1416 |
| Cow position: | chr23:6683914-6683732 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 1231-1361 |
| Cow position: | chr23:16072177-16072306 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 21 |
| Conread position: | 1231-1372 |
| Cow position: | chr23:1551046-1550905 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1233-1374 |
| Cow position: | chr23:40609533-40609395 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1236-1411 |
| Cow position: | chr23:40651308-40651484 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1240-1369 |
| Cow position: | chr23:23471069-23470941 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 101 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1244-1410 |
| Cow position: | chr23:35497871-35498033 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 1252-1412 |
| Cow position: | chr23:35362634-35362789 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1253-1416 |
| Cow position: | chr23:6667598-6667451 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 1255-1416 |
| Cow position: | chr23:40862489-40862330 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 1262-1416 |
| Cow position: | chr23:30210210-30210357 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1264-1374 |
| Cow position: | chr23:39329988-39330095 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1265-1399 |
| Cow position: | chr23:19792110-19791980 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1270-1411 |
| Cow position: | chr23:13320067-13319934 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1276-1369 |
| Cow position: | chr23:10066346-10066439 (view UCSC Genome Browser custom track) |
| Alignm length: | 94 |
| Alignm identity: | 79 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1278-1416 |
| Cow position: | chr23:29393554-29393419 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 28, 93 |
| Conread position: | 1285-1400 |
| Cow position: | chr23:7095511-7095623 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1288-1399 |
| Cow position: | chr23:22536245-22536137 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1288-1416 |
| Cow position: | chr23:20753119-20753000 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1291-1416 |
| Cow position: | chr23:40525874-40525999 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1319-1416 |
| Cow position: | chr23:5797358-5797261 (view UCSC Genome Browser custom track) |
| Alignm length: | 98 |
| Alignm identity: | 83 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1324-1416 |
| Cow position: | chr23:6031952-6031860 (view UCSC Genome Browser custom track) |
| Alignm length: | 93 |
| Alignm identity: | 81 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.