Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036G13.5 |
| Conread position: | 1189-1399 |
| Cow position: | chr24:16055329-16055537 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1190-1379 |
| Cow position: | chr24:4785492-4785680 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 144, 42 |
| Conread position: | 1192-1411 |
| Cow position: | chr24:32158096-32158310 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 122, 29 |
| Conread position: | 1194-1416 |
| Cow position: | chr24:22888765-22888550 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1194-1416 |
| Cow position: | chr24:28335384-28335604 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1197-1416 |
| Cow position: | chr24:40091409-40091619 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 16, 63 |
| Conread position: | 1198-1403 |
| Cow position: | chr24:12136315-12136111 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 136, 23 |
| Conread position: | 1198-1414 |
| Cow position: | chr24:23176527-23176738 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 94, 23 |
| Conread position: | 1199-1376 |
| Cow position: | chr24:32059284-32059456 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1199-1397 |
| Cow position: | chr24:22939867-22939669 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 46 |
| Conread position: | 1199-1412 |
| Cow position: | chr24:36801547-36801342 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 106, 27 |
| Conread position: | 1199-1414 |
| Cow position: | chr24:44074285-44074495 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 1199-1416 |
| Cow position: | chr24:14746820-14746606 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 1199-1416 |
| Cow position: | chr24:39742989-39742773 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 1200-1412 |
| Cow position: | chr24:1438101-1438309 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 92, 21 |
| Conread position: | 1200-1413 |
| Cow position: | chr24:21041771-21041976 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 1201-1416 |
| Cow position: | chr24:28279795-28279582 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1202-1416 |
| Cow position: | chr24:6507602-6507809 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1202-1416 |
| Cow position: | chr24:31378917-31378714 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1203-1369 |
| Cow position: | chr24:35569339-35569182 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1205-1359 |
| Cow position: | chr24:6246218-6246375 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1205-1398 |
| Cow position: | chr24:2143916-2143725 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 1205-1400 |
| Cow position: | chr24:27912890-27912702 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 158, 19 |
| Conread position: | 1206-1369 |
| Cow position: | chr24:44929515-44929353 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1206-1376 |
| Cow position: | chr24:41483158-41482992 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 127, 22 |
| Conread position: | 1206-1391 |
| Cow position: | chr24:41458280-41458104 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 1206-1413 |
| Cow position: | chr24:32758596-32758796 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1206-1416 |
| Cow position: | chr24:42942953-42943163 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 15 |
| Conread position: | 1207-1416 |
| Cow position: | chr24:10546229-10546031 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1207-1416 |
| Cow position: | chr24:19754743-19754534 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 170 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 1207-1416 |
| Cow position: | chr24:39350060-39350258 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 129, 21 |
| Conread position: | 1208-1358 |
| Cow position: | chr24:39336331-39336183 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1208-1396 |
| Cow position: | chr24:42916223-42916400 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1208-1416 |
| Cow position: | chr24:40809203-40809403 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 144, 13 |
| Conread position: | 1209-1416 |
| Cow position: | chr24:27054571-27054368 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 164 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 127, 46 |
| Conread position: | 1210-1416 |
| Cow position: | chr24:18786766-18786959 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1212-1358 |
| Cow position: | chr24:31339011-31338865 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 122, 39 |
| Conread position: | 1212-1416 |
| Cow position: | chr24:34368847-34369049 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 1215-1369 |
| Cow position: | chr24:41332426-41332579 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1215-1398 |
| Cow position: | chr24:38292013-38291836 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1215-1402 |
| Cow position: | chr24:7079941-7079756 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 40, 59 |
| Conread position: | 1215-1413 |
| Cow position: | chr24:31258182-31258374 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1215-1415 |
| Cow position: | chr24:6427861-6427663 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 122, 33 |
| Conread position: | 1215-1416 |
| Cow position: | chr24:14337885-14337692 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr24:15617317-15617512 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr24:17981343-17981149 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr24:23824275-23824464 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 119, 50 |
| Conread position: | 1215-1416 |
| Cow position: | chr24:33290162-33290356 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr24:35827901-35827695 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 1221-1396 |
| Cow position: | chr24:36497584-36497754 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 1221-1411 |
| Cow position: | chr24:42681878-42681700 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1221-1412 |
| Cow position: | chr24:25165187-25164995 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1221-1416 |
| Cow position: | chr24:30860786-30860594 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1222-1415 |
| Cow position: | chr24:24311653-24311465 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 31, 71 |
| Conread position: | 1227-1409 |
| Cow position: | chr24:11201497-11201678 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 18, 9 |
| Conread position: | 1227-1409 |
| Cow position: | chr24:28349729-28349540 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1227-1416 |
| Cow position: | chr24:27633545-27633367 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1228-1397 |
| Cow position: | chr24:16481169-16481326 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1228-1416 |
| Cow position: | chr24:26455986-26455800 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 1229-1415 |
| Cow position: | chr24:14617801-14617617 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 154, 19 |
| Conread position: | 1229-1416 |
| Cow position: | chr24:6061238-6061439 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 103, 181 |
| Conread position: | 1237-1411 |
| Cow position: | chr24:25678160-25677994 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 25 |
| Conread position: | 1240-1411 |
| Cow position: | chr24:5849243-5849415 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 124, 137 |
| Conread position: | 1243-1411 |
| Cow position: | chr24:39123971-39123805 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1247-1413 |
| Cow position: | chr24:35530028-35529872 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1250-1391 |
| Cow position: | chr24:10838012-10837877 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 17, 67 |
| Conread position: | 1251-1416 |
| Cow position: | chr24:39681972-39681813 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1254-1412 |
| Cow position: | chr24:12452903-12452746 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1254-1416 |
| Cow position: | chr24:19612126-19611969 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 1255-1365 |
| Cow position: | chr24:30766903-30766793 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1257-1414 |
| Cow position: | chr24:39474287-39474450 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 1262-1411 |
| Cow position: | chr24:43650001-43649856 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1262-1415 |
| Cow position: | chr24:1271778-1271923 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1271-1416 |
| Cow position: | chr24:41962997-41963140 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 95 |
| Conread position: | 1272-1414 |
| Cow position: | chr24:25112299-25112157 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 62, 108 |
| Conread position: | 1277-1412 |
| Cow position: | chr24:27900824-27900692 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1281-1416 |
| Cow position: | chr24:32085838-32085971 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1298-1411 |
| Cow position: | chr24:27683381-27683493 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 1298-1415 |
| Cow position: | chr24:18567443-18567557 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 113, 66 |
Show alignments to all cow chromosomes.