Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036G13.5 |
| Conread position: | 89-1416 |
| Cow position: | chr25:15357061-15358383 (view UCSC Genome Browser custom track) |
| Alignm length: | 1328 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 1276, 0 |
| Conread position: | 1167-1379 |
| Cow position: | chr25:40845793-40845590 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 1189-1416 |
| Cow position: | chr25:40956782-40957005 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 1190-1416 |
| Cow position: | chr25:12932830-12932606 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 176 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 146, 38 |
| Conread position: | 1193-1318 |
| Cow position: | chr25:21422461-21422337 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 1195-1376 |
| Cow position: | chr25:27534497-27534666 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1197-1412 |
| Cow position: | chr25:26089609-26089829 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 59 |
| Conread position: | 1198-1375 |
| Cow position: | chr25:20614920-20614745 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1198-1416 |
| Cow position: | chr25:33204886-33205099 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 1199-1366 |
| Cow position: | chr25:11041127-11040968 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1199-1392 |
| Cow position: | chr25:4716452-4716260 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 1199-1399 |
| Cow position: | chr25:17701796-17701997 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 93, 151 |
| Conread position: | 1199-1409 |
| Cow position: | chr25:14466904-14467103 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 1199-1411 |
| Cow position: | chr25:10364141-10364350 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 135, 19 |
| Conread position: | 1199-1415 |
| Cow position: | chr25:13321371-13321161 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 108, 19 |
| Conread position: | 1199-1416 |
| Cow position: | chr25:24405537-24405754 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1199-1416 |
| Cow position: | chr25:27534723-27534938 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 45, 54 |
| Conread position: | 1200-1407 |
| Cow position: | chr25:23410852-23410656 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1201-1416 |
| Cow position: | chr25:6178227-6178013 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 175, 20 |
| Conread position: | 1201-1416 |
| Cow position: | chr25:14570559-14570354 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1202-1412 |
| Cow position: | chr25:8511898-8512104 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 167 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 20, 137 |
| Conread position: | 1202-1416 |
| Cow position: | chr25:22575336-22575545 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 168 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1203-1346 |
| Cow position: | chr25:18811051-18810914 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1203-1410 |
| Cow position: | chr25:26240732-26240524 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 161 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1204-1416 |
| Cow position: | chr25:10748302-10748521 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 183 |
| Conread position: | 1205-1369 |
| Cow position: | chr25:37372286-37372445 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 85, 49 |
| Conread position: | 1205-1412 |
| Cow position: | chr25:35109070-35109286 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 87, 23 |
| Conread position: | 1207-1412 |
| Cow position: | chr25:18239698-18239493 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 62, 14 |
| Conread position: | 1207-1416 |
| Cow position: | chr25:30021259-30021053 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 45, 14 |
| Conread position: | 1208-1416 |
| Cow position: | chr25:20428505-20428299 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1209-1416 |
| Cow position: | chr25:24136259-24136457 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 131, 41 |
| Conread position: | 1210-1403 |
| Cow position: | chr25:14075487-14075296 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 154 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1211-1411 |
| Cow position: | chr25:18266346-18266147 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 96, 41 |
| Conread position: | 1211-1416 |
| Cow position: | chr25:18000348-18000549 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 1212-1412 |
| Cow position: | chr25:17911644-17911452 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 104, 41 |
| Conread position: | 1215-1369 |
| Cow position: | chr25:10204488-10204642 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1215-1412 |
| Cow position: | chr25:34378916-34379122 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 33, 86 |
| Conread position: | 1215-1413 |
| Cow position: | chr25:26457497-26457695 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr25:33246093-33245902 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 138, 36 |
| Conread position: | 1215-1416 |
| Cow position: | chr25:34970635-34970445 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 119, 33 |
| Conread position: | 1215-1416 |
| Cow position: | chr25:41093957-41094156 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 159 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 1216-1412 |
| Cow position: | chr25:18448990-18448796 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 118, 88 |
| Conread position: | 1221-1369 |
| Cow position: | chr25:18228350-18228204 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1221-1384 |
| Cow position: | chr25:9109513-9109354 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 1221-1411 |
| Cow position: | chr25:8576867-8576678 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 115, 61 |
| Conread position: | 1221-1412 |
| Cow position: | chr25:20076672-20076480 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 1221-1416 |
| Cow position: | chr25:5407907-5407721 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 113, 64 |
| Conread position: | 1222-1396 |
| Cow position: | chr25:23248568-23248741 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 1222-1406 |
| Cow position: | chr25:29312164-29312345 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 143, 94 |
| Conread position: | 1223-1399 |
| Cow position: | chr25:5365704-5365525 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 111, 29 |
| Conread position: | 1224-1416 |
| Cow position: | chr25:20624767-20624952 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1228-1401 |
| Cow position: | chr25:13800118-13799945 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1228-1404 |
| Cow position: | chr25:36501073-36501251 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 1229-1416 |
| Cow position: | chr25:13560048-13560232 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1230-1382 |
| Cow position: | chr25:20884923-20885073 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 145, 82 |
| Conread position: | 1232-1406 |
| Cow position: | chr25:13562595-13562427 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1234-1416 |
| Cow position: | chr25:8080887-8080705 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 145, 36 |
| Conread position: | 1240-1416 |
| Cow position: | chr25:20811220-20811391 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1248-1402 |
| Cow position: | chr25:10011912-10012065 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 1251-1394 |
| Cow position: | chr25:27504055-27504196 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 34, 64 |
| Conread position: | 1254-1413 |
| Cow position: | chr25:18161424-18161271 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 1259-1416 |
| Cow position: | chr25:22909724-22909877 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 1262-1416 |
| Cow position: | chr25:16691790-16691645 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1270-1416 |
| Cow position: | chr25:33111850-33111988 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1273-1416 |
| Cow position: | chr25:22542691-22542827 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1289-1400 |
| Cow position: | chr25:17472592-17472482 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 1295-1416 |
| Cow position: | chr25:16560073-16560193 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 97 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 1296-1402 |
| Cow position: | chr25:13727288-13727390 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1311-1416 |
| Cow position: | chr25:9519404-9519301 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 87 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
Show alignments to all cow chromosomes.