Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036G13.5 |
| Conread position: | 1168-1412 |
| Cow position: | chr27:7662756-7662992 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 139, 21 |
| Conread position: | 1188-1382 |
| Cow position: | chr27:2403531-2403338 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 32, 56 |
| Conread position: | 1190-1414 |
| Cow position: | chr27:20766202-20765987 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 124, 25 |
| Conread position: | 1195-1365 |
| Cow position: | chr27:31340000-31339830 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 27, 153 |
| Conread position: | 1196-1374 |
| Cow position: | chr27:18028367-18028545 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 172, 158 |
| Conread position: | 1198-1416 |
| Cow position: | chr27:22108453-22108229 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 17, 183 |
| Conread position: | 1199-1376 |
| Cow position: | chr27:17875383-17875207 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1199-1405 |
| Cow position: | chr27:15524037-15523833 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 43 |
| Conread position: | 1200-1358 |
| Cow position: | chr27:1085187-1085035 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1200-1408 |
| Cow position: | chr27:12244369-12244159 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 18, 85 |
| Conread position: | 1200-1412 |
| Cow position: | chr27:2847614-2847825 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 133, 21 |
| Conread position: | 1200-1415 |
| Cow position: | chr27:13958584-13958370 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1200-1416 |
| Cow position: | chr27:783466-783674 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 1200-1416 |
| Cow position: | chr27:2355000-2354795 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 69, 20 |
| Conread position: | 1200-1416 |
| Cow position: | chr27:13005608-13005818 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 1201-1364 |
| Cow position: | chr27:23147453-23147616 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 114, 20 |
| Conread position: | 1201-1389 |
| Cow position: | chr27:6347993-6347807 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 23, 36 |
| Conread position: | 1201-1408 |
| Cow position: | chr27:24333851-24333655 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 1201-1415 |
| Cow position: | chr27:24225137-24224926 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 22, 48 |
| Conread position: | 1202-1416 |
| Cow position: | chr27:14937667-14937455 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1203-1414 |
| Cow position: | chr27:26299607-26299813 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 20, 56 |
| Conread position: | 1203-1416 |
| Cow position: | chr27:1536964-1536745 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 144, 18 |
| Conread position: | 1203-1416 |
| Cow position: | chr27:6883806-6884008 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 137, 18 |
| Conread position: | 1204-1352 |
| Cow position: | chr27:6642395-6642249 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 1204-1410 |
| Cow position: | chr27:11356768-11356573 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 1204-1416 |
| Cow position: | chr27:30365082-30365293 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1205-1401 |
| Cow position: | chr27:30790237-30790424 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 100, 57 |
| Conread position: | 1205-1412 |
| Cow position: | chr27:15319230-15319427 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 129, 41 |
| Conread position: | 1205-1412 |
| Cow position: | chr27:24509586-24509790 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 15, 78 |
| Conread position: | 1205-1416 |
| Cow position: | chr27:21578810-21578599 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 165 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 129, 23 |
| Conread position: | 1205-1416 |
| Cow position: | chr27:27053069-27053269 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1206-1408 |
| Cow position: | chr27:25879867-25880068 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 158 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 1206-1412 |
| Cow position: | chr27:8048966-8048769 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1206-1416 |
| Cow position: | chr27:6159749-6159955 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 21, 79 |
| Conread position: | 1206-1416 |
| Cow position: | chr27:26441285-26441082 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 161 |
| Conread position: | 1207-1410 |
| Cow position: | chr27:8430672-8430470 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 128, 14 |
| Conread position: | 1207-1416 |
| Cow position: | chr27:19601142-19601354 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 161, 14 |
| Conread position: | 1207-1416 |
| Cow position: | chr27:25970174-25970374 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1207-1416 |
| Cow position: | chr27:25998472-25998677 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 1208-1401 |
| Cow position: | chr27:30811223-30811411 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 87, 40 |
| Conread position: | 1208-1406 |
| Cow position: | chr27:16526074-16525880 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 157 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 1208-1414 |
| Cow position: | chr27:24341669-24341876 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 42, 196 |
| Conread position: | 1208-1416 |
| Cow position: | chr27:16493352-16493555 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 15, 85 |
| Conread position: | 1209-1412 |
| Cow position: | chr27:19544152-19543949 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 98, 83 |
| Conread position: | 1209-1416 |
| Cow position: | chr27:10119314-10119104 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 130, 12 |
| Conread position: | 1209-1416 |
| Cow position: | chr27:12247457-12247653 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1210-1408 |
| Cow position: | chr27:8272781-8272978 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 94, 19 |
| Conread position: | 1215-1371 |
| Cow position: | chr27:1899797-1899642 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1215-1402 |
| Cow position: | chr27:11762924-11762741 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 122, 67 |
| Conread position: | 1215-1411 |
| Cow position: | chr27:25982944-25982755 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 1215-1414 |
| Cow position: | chr27:23662819-23662624 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 150, 0 |
| Conread position: | 1216-1346 |
| Cow position: | chr27:7983328-7983198 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1216-1374 |
| Cow position: | chr27:1674924-1675082 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 133, 109 |
| Conread position: | 1216-1416 |
| Cow position: | chr27:29039165-29038966 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 118, 48 |
| Conread position: | 1221-1400 |
| Cow position: | chr27:11746368-11746547 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1221-1414 |
| Cow position: | chr27:13970598-13970417 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1221-1416 |
| Cow position: | chr27:19083937-19083741 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 1222-1339 |
| Cow position: | chr27:19057011-19056895 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 95 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1222-1416 |
| Cow position: | chr27:27050124-27049936 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 1227-1416 |
| Cow position: | chr27:6453994-6454183 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 24, 77 |
| Conread position: | 1228-1366 |
| Cow position: | chr27:9692230-9692095 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 1241-1416 |
| Cow position: | chr27:2640171-2640003 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1246-1411 |
| Cow position: | chr27:21971077-21970916 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 1246-1416 |
| Cow position: | chr27:21681520-21681350 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 131, 70 |
| Conread position: | 1247-1369 |
| Cow position: | chr27:29339542-29339666 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1251-1374 |
| Cow position: | chr27:21991341-21991464 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1256-1412 |
| Cow position: | chr27:13977731-13977575 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 77, 54 |
| Conread position: | 1262-1408 |
| Cow position: | chr27:21138651-21138795 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 71, 104 |
| Conread position: | 1264-1390 |
| Cow position: | chr27:18219220-18219342 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 1267-1416 |
| Cow position: | chr27:11416277-11416423 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 99 |
| Conread position: | 1285-1405 |
| Cow position: | chr27:22781891-22782012 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 1285-1416 |
| Cow position: | chr27:29019890-29019764 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 1294-1416 |
| Cow position: | chr27:18944173-18944051 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 94 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.