Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036G13.5 |
| Conread position: | 1187-1383 |
| Cow position: | chr28:34749950-34749754 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 146, 34 |
| Conread position: | 1198-1405 |
| Cow position: | chr28:25797323-25797117 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 126, 163 |
| Conread position: | 1198-1416 |
| Cow position: | chr28:6643076-6643296 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 164 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 1198-1416 |
| Cow position: | chr28:15678089-15677872 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 136, 28 |
| Conread position: | 1198-1416 |
| Cow position: | chr28:33284905-33285124 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 1199-1402 |
| Cow position: | chr28:21207156-21207368 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 1199-1411 |
| Cow position: | chr28:31373308-31373100 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1199-1416 |
| Cow position: | chr28:5474827-5475041 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 21, 105 |
| Conread position: | 1200-1412 |
| Cow position: | chr28:28513685-28513480 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 133, 163 |
| Conread position: | 1200-1416 |
| Cow position: | chr28:24500410-24500191 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 111 |
| Conread position: | 1201-1413 |
| Cow position: | chr28:6993417-6993620 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 1201-1416 |
| Cow position: | chr28:4764078-4763866 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 172 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 1203-1372 |
| Cow position: | chr28:22331250-22331088 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 1203-1414 |
| Cow position: | chr28:8789351-8789146 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 56, 145 |
| Conread position: | 1203-1416 |
| Cow position: | chr28:25564281-25564071 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1204-1373 |
| Cow position: | chr28:20308295-20308122 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 71 |
| Conread position: | 1204-1414 |
| Cow position: | chr28:5980113-5979911 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1204-1416 |
| Cow position: | chr28:3769472-3769678 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 168 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 1205-1409 |
| Cow position: | chr28:9294297-9294500 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 128, 17 |
| Conread position: | 1205-1416 |
| Cow position: | chr28:1202048-1202254 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 47 |
| Conread position: | 1206-1339 |
| Cow position: | chr28:22498568-22498437 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1206-1416 |
| Cow position: | chr28:21570371-21570177 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 1207-1414 |
| Cow position: | chr28:14508172-14508383 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 1207-1416 |
| Cow position: | chr28:11180968-11181176 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 16, 46 |
| Conread position: | 1207-1416 |
| Cow position: | chr28:19253673-19253469 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1207-1416 |
| Cow position: | chr28:23703600-23703393 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 180, 14 |
| Conread position: | 1208-1401 |
| Cow position: | chr28:19465196-19465390 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 151 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 124, 40 |
| Conread position: | 1208-1412 |
| Cow position: | chr28:31165788-31165992 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1208-1416 |
| Cow position: | chr28:9821784-9821978 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 1209-1370 |
| Cow position: | chr28:17624978-17625140 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 1209-1413 |
| Cow position: | chr28:1608382-1608177 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 163 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 111, 12 |
| Conread position: | 1209-1416 |
| Cow position: | chr28:17362408-17362613 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 48, 54 |
| Conread position: | 1210-1382 |
| Cow position: | chr28:3940001-3940176 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 11 |
| Conread position: | 1210-1416 |
| Cow position: | chr28:15081733-15081934 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 12, 44 |
| Conread position: | 1212-1403 |
| Cow position: | chr28:3822951-3823136 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 186, 99 |
| Conread position: | 1214-1409 |
| Cow position: | chr28:2517634-2517817 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 124, 7 |
| Conread position: | 1214-1415 |
| Cow position: | chr28:18934641-18934441 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 108, 14 |
| Conread position: | 1214-1415 |
| Cow position: | chr28:23668597-23668795 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 133, 39 |
| Conread position: | 1215-1390 |
| Cow position: | chr28:15406240-15406073 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1215-1407 |
| Cow position: | chr28:11500706-11500892 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 133, 6 |
| Conread position: | 1215-1412 |
| Cow position: | chr28:19564029-19564238 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 1215-1413 |
| Cow position: | chr28:25825679-25825873 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1215-1415 |
| Cow position: | chr28:17345681-17345879 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 80, 7 |
| Conread position: | 1215-1416 |
| Cow position: | chr28:4274658-4274853 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1215-1416 |
| Cow position: | chr28:7539971-7540171 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 154 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 1216-1412 |
| Cow position: | chr28:26719535-26719333 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1218-1412 |
| Cow position: | chr28:7157019-7156827 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 13 |
| Conread position: | 1221-1416 |
| Cow position: | chr28:34198928-34199120 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 1222-1412 |
| Cow position: | chr28:16041044-16041227 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 110, 123 |
| Conread position: | 1222-1413 |
| Cow position: | chr28:12999274-12999087 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 70, 30 |
| Conread position: | 1223-1414 |
| Cow position: | chr28:8336140-8335950 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 1224-1407 |
| Cow position: | chr28:9237492-9237310 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 1227-1405 |
| Cow position: | chr28:11200714-11200883 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 36, 71 |
| Conread position: | 1228-1412 |
| Cow position: | chr28:23676307-23676128 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 79, 52 |
| Conread position: | 1228-1416 |
| Cow position: | chr28:20963354-20963543 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 1229-1412 |
| Cow position: | chr28:13866015-13865836 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 53, 84 |
| Conread position: | 1229-1416 |
| Cow position: | chr28:9176586-9176765 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 1230-1412 |
| Cow position: | chr28:7805254-7805431 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 104, 20 |
| Conread position: | 1233-1413 |
| Cow position: | chr28:11007372-11007188 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1236-1416 |
| Cow position: | chr28:20275294-20275116 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 1242-1407 |
| Cow position: | chr28:17601714-17601880 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 65, 70 |
| Conread position: | 1243-1416 |
| Cow position: | chr28:25340429-25340259 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1246-1381 |
| Cow position: | chr28:22421828-22421964 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 1250-1402 |
| Cow position: | chr28:4776898-4776745 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 1256-1391 |
| Cow position: | chr28:1604962-1604829 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 26 |
| Conread position: | 1257-1411 |
| Cow position: | chr28:32300216-32300363 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 1261-1412 |
| Cow position: | chr28:5406690-5406550 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 1265-1416 |
| Cow position: | chr28:21873897-21873746 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1273-1409 |
| Cow position: | chr28:19133904-19133775 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 1276-1415 |
| Cow position: | chr28:12046786-12046926 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1298-1416 |
| Cow position: | chr28:13693854-13693741 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 1304-1416 |
| Cow position: | chr28:4098929-4098816 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 94 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.