Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 479-876 |
| Cow position: | chr10:54160204-54159814 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 272 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 123, 16 |
| Conread position: | 491-860 |
| Cow position: | chr10:54801819-54802184 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 495-874 |
| Cow position: | chr10:58543542-58543919 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 255 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 55, 22 |
| Conread position: | 500-833 |
| Cow position: | chr10:61876144-61875792 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 500-876 |
| Cow position: | chr10:60702596-60702981 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 8 |
| Conread position: | 501-890 |
| Cow position: | chr10:6532561-6532963 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 19 |
| Conread position: | 503-678 |
| Cow position: | chr10:61507244-61507068 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 503-831 |
| Cow position: | chr10:22728513-22728180 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 164, 19 |
| Conread position: | 503-858 |
| Cow position: | chr10:919438-919804 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 503-858 |
| Cow position: | chr10:52076591-52076252 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 107, 19 |
| Conread position: | 503-861 |
| Cow position: | chr10:17059992-17059616 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 503-876 |
| Cow position: | chr10:68981001-68980622 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 263 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 504-850 |
| Cow position: | chr10:59520181-59519829 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 504-860 |
| Cow position: | chr10:60486347-60485988 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 255 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 195, 18 |
| Conread position: | 505-699 |
| Cow position: | chr10:30080913-30080724 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 112, 17 |
| Conread position: | 505-868 |
| Cow position: | chr10:2850771-2850403 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 181, 17 |
| Conread position: | 508-766 |
| Cow position: | chr10:52450829-52450571 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 508-876 |
| Cow position: | chr10:32396396-32396023 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 268 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 155, 6 |
| Conread position: | 509-861 |
| Cow position: | chr10:8401708-8402052 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 509-874 |
| Cow position: | chr10:54401349-54400976 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 259 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 101, 24 |
| Conread position: | 510-693 |
| Cow position: | chr10:14731320-14731139 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 113, 12 |
| Conread position: | 511-733 |
| Cow position: | chr10:9643098-9642871 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 512-860 |
| Cow position: | chr10:15830450-15830804 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 111, 10 |
| Conread position: | 512-890 |
| Cow position: | chr10:45507347-45507726 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 110, 10 |
| Conread position: | 513-839 |
| Cow position: | chr10:45617256-45616932 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 110, 9 |
| Conread position: | 513-859 |
| Cow position: | chr10:60427872-60428231 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 9 |
| Conread position: | 514-815 |
| Cow position: | chr10:16544039-16544342 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 514-890 |
| Cow position: | chr10:4402939-4402552 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 265 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 520-874 |
| Cow position: | chr10:39024264-39024617 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 232 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 207, 50 |
| Conread position: | 522-699 |
| Cow position: | chr10:38855124-38854952 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 522-760 |
| Cow position: | chr10:15216238-15216487 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 87, 50 |
| Conread position: | 522-870 |
| Cow position: | chr10:22287294-22286944 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 522-874 |
| Cow position: | chr10:2085975-2086336 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 242 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 52 |
| Conread position: | 522-875 |
| Cow position: | chr10:25544489-25544843 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 88, 25 |
| Conread position: | 522-879 |
| Cow position: | chr10:9621722-9622089 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 132, 47 |
| Conread position: | 525-853 |
| Cow position: | chr10:20200159-20200496 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 525-871 |
| Cow position: | chr10:53104535-53104900 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 25 |
| Conread position: | 525-876 |
| Cow position: | chr10:31696089-31696430 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 169, 25 |
| Conread position: | 525-876 |
| Cow position: | chr10:43564042-43564405 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 525-876 |
| Cow position: | chr10:51724237-51723888 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 255 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 97, 29 |
| Conread position: | 525-877 |
| Cow position: | chr10:5953784-5954129 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 137, 48 |
| Conread position: | 526-876 |
| Cow position: | chr10:50579021-50579386 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 528-876 |
| Cow position: | chr10:6811578-6811930 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 246 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 83, 44 |
| Conread position: | 528-891 |
| Cow position: | chr10:25875762-25875387 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 79, 45 |
| Conread position: | 530-876 |
| Cow position: | chr10:17132568-17132208 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 77, 17 |
| Conread position: | 547-876 |
| Cow position: | chr10:29185790-29185456 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 64, 25 |
| Conread position: | 554-815 |
| Cow position: | chr10:19218580-19218845 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 555-862 |
| Cow position: | chr10:16455259-16455567 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 99, 17 |
| Conread position: | 555-876 |
| Cow position: | chr10:54525454-54525121 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 557-876 |
| Cow position: | chr10:51618735-51619061 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 54, 81 |
| Conread position: | 557-890 |
| Cow position: | chr10:27173354-27173702 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 6, 17 |
| Conread position: | 559-893 |
| Cow position: | chr10:46064896-46064558 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 66, 39 |
| Conread position: | 560-876 |
| Cow position: | chr10:35444262-35443942 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 7 |
| Conread position: | 562-860 |
| Cow position: | chr10:27127996-27128291 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 11 |
| Conread position: | 571-889 |
| Cow position: | chr10:28051323-28051653 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 35, 296 |
| Conread position: | 573-883 |
| Cow position: | chr10:4019834-4019526 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 85, 38 |
| Conread position: | 610-876 |
| Cow position: | chr10:10529853-10530128 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 74 |
| Conread position: | 610-876 |
| Cow position: | chr10:55641619-55641341 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 129 |
| Conread position: | 611-861 |
| Cow position: | chr10:34425183-34425448 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 11, 229 |
| Conread position: | 617-876 |
| Cow position: | chr10:25911645-25911371 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 29, 73 |
| Conread position: | 624-860 |
| Cow position: | chr10:30728843-30728591 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 175 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 191 |
| Conread position: | 624-874 |
| Cow position: | chr10:39248358-39248624 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 31, 158 |
| Conread position: | 624-888 |
| Cow position: | chr10:23173763-23173492 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 77, 48 |
| Conread position: | 627-871 |
| Cow position: | chr10:13790504-13790254 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 36, 63 |
| Conread position: | 628-875 |
| Cow position: | chr10:46228422-46228159 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 631-873 |
| Cow position: | chr10:25645456-25645708 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 645-879 |
| Cow position: | chr10:6043727-6043490 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 12, 68 |
| Conread position: | 689-884 |
| Cow position: | chr10:67362325-67362132 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 716-876 |
| Cow position: | chr10:7653185-7653026 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 142, 8 |
| Conread position: | 719-874 |
| Cow position: | chr10:13162214-13162370 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 719-881 |
| Cow position: | chr10:23454893-23455057 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 722-876 |
| Cow position: | chr10:78985-79145 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 729-876 |
| Cow position: | chr10:62041398-62041548 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 85, 0 |
Show alignments to all cow chromosomes.