Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 491-873 |
| Cow position: | chr13:62379197-62379583 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 114, 22 |
| Conread position: | 493-807 |
| Cow position: | chr13:38263920-38263595 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 110, 29 |
| Conread position: | 495-890 |
| Cow position: | chr13:56463182-56463598 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 287 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 497-801 |
| Cow position: | chr13:49148995-49149303 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 114, 25 |
| Conread position: | 500-686 |
| Cow position: | chr13:41265332-41265522 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 84, 22 |
| Conread position: | 502-891 |
| Cow position: | chr13:11051252-11051644 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 103, 20 |
| Conread position: | 503-838 |
| Cow position: | chr13:48550728-48550394 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 503-876 |
| Cow position: | chr13:9558963-9559319 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 171, 19 |
| Conread position: | 503-892 |
| Cow position: | chr13:21277004-21277406 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 503-892 |
| Cow position: | chr13:33587319-33587696 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 504-834 |
| Cow position: | chr13:41892395-41892069 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 504-874 |
| Cow position: | chr13:12708636-12708257 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 254 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 67 |
| Conread position: | 504-876 |
| Cow position: | chr13:29201030-29201393 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 505-860 |
| Cow position: | chr13:57893870-57893523 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 68 |
| Conread position: | 505-893 |
| Cow position: | chr13:52277929-52278325 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 17 |
| Conread position: | 506-821 |
| Cow position: | chr13:27068482-27068171 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 507-842 |
| Cow position: | chr13:34825065-34824719 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 65 |
| Conread position: | 508-750 |
| Cow position: | chr13:62291261-62291507 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 150, 14 |
| Conread position: | 508-874 |
| Cow position: | chr13:46495523-46495901 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 99, 9 |
| Conread position: | 509-810 |
| Cow position: | chr13:23653177-23653493 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 98, 13 |
| Conread position: | 509-876 |
| Cow position: | chr13:52800274-52799889 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 102, 13 |
| Conread position: | 514-876 |
| Cow position: | chr13:11341707-11341356 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 7 |
| Conread position: | 514-877 |
| Cow position: | chr13:40188557-40188930 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 264 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 73, 8 |
| Conread position: | 524-874 |
| Cow position: | chr13:46641959-46641603 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 15 |
| Conread position: | 525-875 |
| Cow position: | chr13:59124630-59124993 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 133, 50 |
| Conread position: | 525-876 |
| Cow position: | chr13:47571293-47570933 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 138, 47 |
| Conread position: | 526-691 |
| Cow position: | chr13:11242684-11242849 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 136, 47 |
| Conread position: | 526-842 |
| Cow position: | chr13:51738656-51738331 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 87, 32 |
| Conread position: | 526-876 |
| Cow position: | chr13:2790061-2789721 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 99, 44 |
| Conread position: | 529-896 |
| Cow position: | chr13:55256070-55255691 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 530-890 |
| Cow position: | chr13:493045-492677 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 32, 13 |
| Conread position: | 532-860 |
| Cow position: | chr13:22489946-22489610 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 94, 64 |
| Conread position: | 533-876 |
| Cow position: | chr13:34090224-34089873 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 254 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 534-876 |
| Cow position: | chr13:49656099-49656449 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 547-828 |
| Cow position: | chr13:44524603-44524892 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 554-876 |
| Cow position: | chr13:48608697-48608360 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 555-853 |
| Cow position: | chr13:18874123-18873815 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 206 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 555-890 |
| Cow position: | chr13:40344836-40344489 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 229 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 560-876 |
| Cow position: | chr13:30080761-30081090 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 564-800 |
| Cow position: | chr13:57430644-57430882 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 564-860 |
| Cow position: | chr13:32842349-32842042 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 207 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 571-832 |
| Cow position: | chr13:52774893-52775167 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 51, 79 |
| Conread position: | 577-815 |
| Cow position: | chr13:35605229-35604984 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 170 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 34, 6 |
| Conread position: | 583-864 |
| Cow position: | chr13:45131803-45132087 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 23, 112 |
| Conread position: | 583-891 |
| Cow position: | chr13:22360976-22360655 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 593-838 |
| Cow position: | chr13:21047428-21047688 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 18, 61 |
| Conread position: | 621-899 |
| Cow position: | chr13:1741516-1741232 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 37, 239 |
| Conread position: | 626-876 |
| Cow position: | chr13:44568378-44568634 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 64 |
| Conread position: | 652-874 |
| Cow position: | chr13:5656402-5656636 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 662-877 |
| Cow position: | chr13:18977242-18977450 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 192, 26 |
| Conread position: | 663-860 |
| Cow position: | chr13:48792539-48792741 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 28 |
| Conread position: | 729-879 |
| Cow position: | chr13:91818-91972 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 85, 51 |
| Conread position: | 730-860 |
| Cow position: | chr13:55958009-55957880 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 99 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.