Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 407-876 |
| Cow position: | chr15:17695738-17695271 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 501-876 |
| Cow position: | chr15:29727434-29727802 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 100, 21 |
| Conread position: | 501-876 |
| Cow position: | chr15:34957039-34956644 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 269 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 503-784 |
| Cow position: | chr15:40640619-40640337 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 134, 19 |
| Conread position: | 503-876 |
| Cow position: | chr15:18755104-18755495 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 274 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 104, 9 |
| Conread position: | 504-860 |
| Cow position: | chr15:6885557-6885184 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 505-876 |
| Cow position: | chr15:13896972-13896578 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 505-876 |
| Cow position: | chr15:34717997-34717610 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 102, 23 |
| Conread position: | 505-877 |
| Cow position: | chr15:5431247-5431627 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 267 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 106, 17 |
| Conread position: | 506-724 |
| Cow position: | chr15:23712270-23712047 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 7 |
| Conread position: | 507-874 |
| Cow position: | chr15:24911640-24911272 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 57, 23 |
| Conread position: | 507-890 |
| Cow position: | chr15:40185197-40184819 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 508-685 |
| Cow position: | chr15:47886046-47886224 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 98, 14 |
| Conread position: | 508-697 |
| Cow position: | chr15:48778526-48778716 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 137, 14 |
| Conread position: | 508-860 |
| Cow position: | chr15:34269032-34269363 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 222, 14 |
| Conread position: | 508-870 |
| Cow position: | chr15:15839069-15838689 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 14 |
| Conread position: | 513-877 |
| Cow position: | chr15:20433241-20432865 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 9 |
| Conread position: | 514-801 |
| Cow position: | chr15:5909557-5909848 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 91, 8 |
| Conread position: | 520-834 |
| Cow position: | chr15:42227322-42227634 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 72, 52 |
| Conread position: | 522-876 |
| Cow position: | chr15:41402083-41402436 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 8, 19 |
| Conread position: | 522-899 |
| Cow position: | chr15:34507898-34508267 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 18, 46 |
| Conread position: | 523-859 |
| Cow position: | chr15:26415092-26414740 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 84, 56 |
| Conread position: | 523-860 |
| Cow position: | chr15:22971591-22971943 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 49 |
| Conread position: | 524-889 |
| Cow position: | chr15:22564329-22564700 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 525-892 |
| Cow position: | chr15:15395028-15395411 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 80, 47 |
| Conread position: | 526-839 |
| Cow position: | chr15:22620293-22619960 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 47 |
| Conread position: | 526-846 |
| Cow position: | chr15:6035765-6036092 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 46 |
| Conread position: | 526-860 |
| Cow position: | chr15:34091764-34092081 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 132, 46 |
| Conread position: | 527-860 |
| Cow position: | chr15:17919933-17919588 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 37, 23 |
| Conread position: | 529-761 |
| Cow position: | chr15:16477118-16476875 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 530-874 |
| Cow position: | chr15:9971717-9971358 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 554-860 |
| Cow position: | chr15:34215765-34215451 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 18 |
| Conread position: | 554-890 |
| Cow position: | chr15:34225011-34225365 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 54, 18 |
| Conread position: | 554-893 |
| Cow position: | chr15:36083904-36084250 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 232 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 115, 18 |
| Conread position: | 555-860 |
| Cow position: | chr15:13682531-13682220 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 556-876 |
| Cow position: | chr15:38100039-38099706 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 557-876 |
| Cow position: | chr15:5884093-5883758 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 560-874 |
| Cow position: | chr15:19694136-19694460 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 45, 9 |
| Conread position: | 560-874 |
| Cow position: | chr15:21678121-21677792 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 107, 10 |
| Conread position: | 561-894 |
| Cow position: | chr15:8271729-8272055 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 567-893 |
| Cow position: | chr15:6283548-6283208 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 5, 45 |
| Conread position: | 613-898 |
| Cow position: | chr15:40979169-40979460 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 26 |
| Conread position: | 621-876 |
| Cow position: | chr15:9038006-9038280 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 42, 106 |
| Conread position: | 624-860 |
| Cow position: | chr15:18688269-18688021 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 72 |
| Conread position: | 631-859 |
| Cow position: | chr15:10803404-10803173 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 660-890 |
| Cow position: | chr15:26148894-26148659 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 24 |
| Conread position: | 692-893 |
| Cow position: | chr15:25120826-25121032 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 715-872 |
| Cow position: | chr15:47886298-47886456 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 17, 0 |
Show alignments to all cow chromosomes.