Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 498-678 |
| Cow position: | chr16:15421912-15421734 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 29 |
| Conread position: | 499-877 |
| Cow position: | chr16:44755646-44756020 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 266 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 76, 9 |
| Conread position: | 500-850 |
| Cow position: | chr16:13407836-13407488 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 501-876 |
| Cow position: | chr16:33513688-33513305 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 272 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 106, 7 |
| Conread position: | 502-876 |
| Cow position: | chr16:9592905-9592511 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 18 |
| Conread position: | 503-687 |
| Cow position: | chr16:55485841-55486026 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 503-785 |
| Cow position: | chr16:38886143-38886430 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 149, 19 |
| Conread position: | 503-839 |
| Cow position: | chr16:13261352-13261015 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 503-874 |
| Cow position: | chr16:50898786-50899165 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 78, 19 |
| Conread position: | 503-898 |
| Cow position: | chr16:30543121-30542731 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 504-874 |
| Cow position: | chr16:50518082-50517707 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 250 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 504-876 |
| Cow position: | chr16:15265111-15264728 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 12, 75 |
| Conread position: | 505-846 |
| Cow position: | chr16:41533889-41534243 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 506-695 |
| Cow position: | chr16:33339652-33339465 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 156, 7 |
| Conread position: | 508-820 |
| Cow position: | chr16:19006660-19006351 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 42, 6 |
| Conread position: | 508-851 |
| Cow position: | chr16:36882316-36881979 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 255 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 107, 14 |
| Conread position: | 508-868 |
| Cow position: | chr16:18950371-18950727 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 510-724 |
| Cow position: | chr16:21508959-21508745 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 99, 11 |
| Conread position: | 511-874 |
| Cow position: | chr16:40384842-40384472 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 61 |
| Conread position: | 511-876 |
| Cow position: | chr16:44705565-44705202 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 88, 61 |
| Conread position: | 512-876 |
| Cow position: | chr16:41723349-41722971 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 114, 9 |
| Conread position: | 513-861 |
| Cow position: | chr16:8665964-8666316 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 116, 9 |
| Conread position: | 513-875 |
| Cow position: | chr16:45149529-45149162 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 93, 26 |
| Conread position: | 516-870 |
| Cow position: | chr16:16840129-16840485 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 257 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 89, 5 |
| Conread position: | 519-875 |
| Cow position: | chr16:52094574-52094203 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 38, 55 |
| Conread position: | 520-876 |
| Cow position: | chr16:39372102-39372463 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 143, 53 |
| Conread position: | 522-876 |
| Cow position: | chr16:19068145-19067779 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 14, 51 |
| Conread position: | 522-876 |
| Cow position: | chr16:53215182-53214824 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 53, 33 |
| Conread position: | 523-815 |
| Cow position: | chr16:24224050-24224345 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 84, 50 |
| Conread position: | 524-768 |
| Cow position: | chr16:842535-842284 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 10 |
| Conread position: | 525-889 |
| Cow position: | chr16:18514641-18514276 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 251 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 130, 47 |
| Conread position: | 526-876 |
| Cow position: | chr16:10950109-10950469 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 248 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 45 |
| Conread position: | 526-876 |
| Cow position: | chr16:39445572-39445929 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 65, 46 |
| Conread position: | 532-768 |
| Cow position: | chr16:54938139-54937897 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 86, 40 |
| Conread position: | 532-890 |
| Cow position: | chr16:42244816-42244443 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 79, 39 |
| Conread position: | 542-876 |
| Cow position: | chr16:1338767-1338424 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 244 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 65, 6 |
| Conread position: | 552-857 |
| Cow position: | chr16:10625211-10625533 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 10, 22 |
| Conread position: | 554-876 |
| Cow position: | chr16:37345909-37346246 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 13, 19 |
| Conread position: | 554-895 |
| Cow position: | chr16:1417557-1417201 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 255 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 48, 18 |
| Conread position: | 555-876 |
| Cow position: | chr16:22579333-22579669 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 557-815 |
| Cow position: | chr16:36950056-36949796 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 15 |
| Conread position: | 560-874 |
| Cow position: | chr16:52403826-52403506 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 563-871 |
| Cow position: | chr16:20564872-20564550 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 571-859 |
| Cow position: | chr16:14363250-14362954 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 36, 146 |
| Conread position: | 571-860 |
| Cow position: | chr16:37054159-37054440 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 37, 80 |
| Conread position: | 571-876 |
| Cow position: | chr16:13298913-13299231 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 35, 301 |
| Conread position: | 571-876 |
| Cow position: | chr16:46440009-46440326 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 36, 213 |
| Conread position: | 571-890 |
| Cow position: | chr16:14618670-14618997 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 128 |
| Conread position: | 609-860 |
| Cow position: | chr16:10685467-10685730 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 613-862 |
| Cow position: | chr16:45300777-45301037 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 624-876 |
| Cow position: | chr16:46617258-46616996 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 672-876 |
| Cow position: | chr16:19395571-19395781 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 716-876 |
| Cow position: | chr16:30609884-30610040 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 139 |
| Conread position: | 719-875 |
| Cow position: | chr16:17657544-17657389 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 134 |
| Conread position: | 719-893 |
| Cow position: | chr16:19286825-19286648 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 13, 141 |
Show alignments to all cow chromosomes.