Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 488-860 |
| Cow position: | chr17:35037910-35037526 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 270 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 21, 5 |
| Conread position: | 488-876 |
| Cow position: | chr17:28199666-28200061 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 276 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 12, 35 |
| Conread position: | 489-890 |
| Cow position: | chr17:28100386-28100809 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 503-647 |
| Cow position: | chr17:28529496-28529351 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 105, 19 |
| Conread position: | 503-756 |
| Cow position: | chr17:35301244-35301496 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 23, 70 |
| Conread position: | 503-890 |
| Cow position: | chr17:24228733-24229110 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 120, 10 |
| Conread position: | 504-728 |
| Cow position: | chr17:26533888-26533664 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 85, 18 |
| Conread position: | 505-828 |
| Cow position: | chr17:28035555-28035227 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 237 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 141, 13 |
| Conread position: | 505-876 |
| Cow position: | chr17:8705375-8705022 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 506-714 |
| Cow position: | chr17:29329590-29329383 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 506-874 |
| Cow position: | chr17:18551032-18551393 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 508-820 |
| Cow position: | chr17:18438703-18439018 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 90, 14 |
| Conread position: | 509-876 |
| Cow position: | chr17:26815042-26814665 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 247 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 513-817 |
| Cow position: | chr17:9769545-9769834 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 9 |
| Conread position: | 513-876 |
| Cow position: | chr17:12974369-12974733 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 9 |
| Conread position: | 514-846 |
| Cow position: | chr17:29958950-29959291 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 102, 8 |
| Conread position: | 514-876 |
| Cow position: | chr17:28210177-28209808 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 8, 59 |
| Conread position: | 520-815 |
| Cow position: | chr17:26646835-26646521 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 520-876 |
| Cow position: | chr17:7801631-7801982 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 6, 52 |
| Conread position: | 521-876 |
| Cow position: | chr17:26519171-26519523 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 248 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 56, 159 |
| Conread position: | 522-786 |
| Cow position: | chr17:26314684-26314418 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 67, 21 |
| Conread position: | 522-801 |
| Cow position: | chr17:25098336-25098620 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 141, 49 |
| Conread position: | 522-863 |
| Cow position: | chr17:32019148-32018806 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 29, 49 |
| Conread position: | 522-865 |
| Cow position: | chr17:37029549-37029897 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 241 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 106, 51 |
| Conread position: | 522-875 |
| Cow position: | chr17:645810-646173 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 50, 97 |
| Conread position: | 522-876 |
| Cow position: | chr17:26428801-26429166 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 27, 33 |
| Conread position: | 523-795 |
| Cow position: | chr17:36836544-36836265 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 113, 48 |
| Conread position: | 523-876 |
| Cow position: | chr17:35576126-35575745 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 17, 47 |
| Conread position: | 525-815 |
| Cow position: | chr17:41285606-41285894 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 38, 29 |
| Conread position: | 525-876 |
| Cow position: | chr17:28214343-28213997 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 92, 45 |
| Conread position: | 527-892 |
| Cow position: | chr17:29916473-29916096 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 528-876 |
| Cow position: | chr17:32028012-32028365 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 135, 44 |
| Conread position: | 538-876 |
| Cow position: | chr17:12992022-12991673 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 60, 35 |
| Conread position: | 539-865 |
| Cow position: | chr17:28182849-28183191 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 544-796 |
| Cow position: | chr17:3097338-3097078 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 78, 9 |
| Conread position: | 548-875 |
| Cow position: | chr17:28892991-28893331 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 20, 25 |
| Conread position: | 557-796 |
| Cow position: | chr17:32190024-32190271 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 92, 54 |
| Conread position: | 557-860 |
| Cow position: | chr17:36123908-36123589 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 16 |
| Conread position: | 557-871 |
| Cow position: | chr17:30065724-30065416 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 557-876 |
| Cow position: | chr17:31305331-31305667 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 7, 16 |
| Conread position: | 557-876 |
| Cow position: | chr17:35352283-35351964 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 557-877 |
| Cow position: | chr17:19024833-19025145 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 557-893 |
| Cow position: | chr17:29509910-29510245 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 222 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 17, 11 |
| Conread position: | 558-876 |
| Cow position: | chr17:20134714-20135022 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 17, 104 |
| Conread position: | 560-831 |
| Cow position: | chr17:42535005-42535275 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 47, 13 |
| Conread position: | 561-873 |
| Cow position: | chr17:18628345-18628017 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 562-875 |
| Cow position: | chr17:27788325-27788010 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 562-876 |
| Cow position: | chr17:33414012-33414344 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 49, 10 |
| Conread position: | 562-899 |
| Cow position: | chr17:28801085-28800737 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 46, 10 |
| Conread position: | 571-877 |
| Cow position: | chr17:3397522-3397855 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 30, 94 |
| Conread position: | 571-890 |
| Cow position: | chr17:28820608-28820930 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 99, 36 |
| Conread position: | 572-878 |
| Cow position: | chr17:30150917-30151234 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 82, 22 |
| Conread position: | 595-893 |
| Cow position: | chr17:37362576-37362890 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 603-860 |
| Cow position: | chr17:9915156-9914886 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 20, 250 |
| Conread position: | 621-876 |
| Cow position: | chr17:28223972-28224234 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 183 |
| Conread position: | 624-876 |
| Cow position: | chr17:28474929-28474694 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 631-876 |
| Cow position: | chr17:31845818-31846078 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 650-868 |
| Cow position: | chr17:33879860-33880089 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
Show alignments to all cow chromosomes.