Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 429-853 |
| Cow position: | chr18:10119703-10119273 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 478-899 |
| Cow position: | chr18:32538524-32538956 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 14 |
| Conread position: | 494-893 |
| Cow position: | chr18:53040993-53041410 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 271 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 117, 9 |
| Conread position: | 500-742 |
| Cow position: | chr18:9135970-9135731 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 13 |
| Conread position: | 500-845 |
| Cow position: | chr18:51252319-51251964 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 17, 22 |
| Conread position: | 500-876 |
| Cow position: | chr18:38625634-38625248 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 107, 22 |
| Conread position: | 501-684 |
| Cow position: | chr18:28208411-28208600 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 103, 21 |
| Conread position: | 501-810 |
| Cow position: | chr18:40221405-40221098 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 162, 21 |
| Conread position: | 501-876 |
| Cow position: | chr18:21240301-21239907 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 284 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 6, 28 |
| Conread position: | 502-723 |
| Cow position: | chr18:7075261-7075043 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 106, 20 |
| Conread position: | 502-877 |
| Cow position: | chr18:14750374-14749992 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 259 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 51, 25 |
| Conread position: | 503-777 |
| Cow position: | chr18:7445989-7445701 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 102, 19 |
| Conread position: | 503-786 |
| Cow position: | chr18:14183134-14182843 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 104, 10 |
| Conread position: | 503-809 |
| Cow position: | chr18:11639357-11639661 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 163, 19 |
| Conread position: | 503-815 |
| Cow position: | chr18:51333088-51332779 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 503-861 |
| Cow position: | chr18:32047060-32046698 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 503-890 |
| Cow position: | chr18:14185733-14185337 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 86, 18 |
| Conread position: | 504-874 |
| Cow position: | chr18:48309579-48309964 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 18 |
| Conread position: | 504-875 |
| Cow position: | chr18:53756750-53756375 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 508-772 |
| Cow position: | chr18:23051438-23051721 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 104, 59 |
| Conread position: | 508-775 |
| Cow position: | chr18:14121273-14120994 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 97, 63 |
| Conread position: | 508-809 |
| Cow position: | chr18:31678658-31678970 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 508-833 |
| Cow position: | chr18:14414274-14414607 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 99, 19 |
| Conread position: | 508-877 |
| Cow position: | chr18:40312494-40312870 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 21, 66 |
| Conread position: | 511-760 |
| Cow position: | chr18:11343895-11343650 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 511-796 |
| Cow position: | chr18:43779335-43779628 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 96, 11 |
| Conread position: | 513-872 |
| Cow position: | chr18:22386526-22386158 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 134, 9 |
| Conread position: | 514-890 |
| Cow position: | chr18:19274232-19273838 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 8 |
| Conread position: | 516-858 |
| Cow position: | chr18:1007528-1007863 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 147, 6 |
| Conread position: | 522-862 |
| Cow position: | chr18:33872834-33873182 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 251 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 124, 50 |
| Conread position: | 522-876 |
| Cow position: | chr18:14818032-14817685 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 228 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 522-876 |
| Cow position: | chr18:30373808-30373458 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 89, 32 |
| Conread position: | 524-890 |
| Cow position: | chr18:28680480-28680092 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 83, 48 |
| Conread position: | 525-860 |
| Cow position: | chr18:23882666-23882316 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 38, 27 |
| Conread position: | 525-876 |
| Cow position: | chr18:49686965-49686602 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 255 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 105, 47 |
| Conread position: | 525-892 |
| Cow position: | chr18:11624382-11624027 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 525-893 |
| Cow position: | chr18:14456810-14456437 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 61, 47 |
| Conread position: | 525-900 |
| Cow position: | chr18:19840720-19840341 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 64, 47 |
| Conread position: | 526-784 |
| Cow position: | chr18:47364492-47364223 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 529-871 |
| Cow position: | chr18:41269955-41269601 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 115, 160 |
| Conread position: | 530-876 |
| Cow position: | chr18:41958945-41958595 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 77, 36 |
| Conread position: | 554-899 |
| Cow position: | chr18:14286418-14286772 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 248 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 71, 38 |
| Conread position: | 555-796 |
| Cow position: | chr18:44767847-44767598 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 17 |
| Conread position: | 557-677 |
| Cow position: | chr18:32063383-32063499 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 557-852 |
| Cow position: | chr18:49656496-49656800 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 15, 9 |
| Conread position: | 557-874 |
| Cow position: | chr18:21357940-21357614 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 15 |
| Conread position: | 560-876 |
| Cow position: | chr18:53279706-53280019 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 562-861 |
| Cow position: | chr18:29953307-29953617 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 44, 13 |
| Conread position: | 562-871 |
| Cow position: | chr18:55689621-55689320 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 14, 106 |
| Conread position: | 563-869 |
| Cow position: | chr18:3891346-3891655 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 42, 9 |
| Conread position: | 575-889 |
| Cow position: | chr18:32427813-32428146 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 79 |
| Conread position: | 584-876 |
| Cow position: | chr18:49155985-49156287 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 25, 162 |
| Conread position: | 597-842 |
| Cow position: | chr18:21374034-21373781 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 10, 79 |
| Conread position: | 621-876 |
| Cow position: | chr18:30676413-30676151 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 24, 59 |
| Conread position: | 625-871 |
| Cow position: | chr18:19907478-19907740 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 36, 225 |
| Conread position: | 636-889 |
| Cow position: | chr18:44519992-44519731 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 27, 80 |
| Conread position: | 719-899 |
| Cow position: | chr18:45629246-45629430 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 12, 152 |
| Conread position: | 729-876 |
| Cow position: | chr18:31157200-31157056 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 735-876 |
| Cow position: | chr18:21245576-21245432 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 77, 108 |
Show alignments to all cow chromosomes.