Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 489-799 |
| Cow position: | chr19:35461830-35462157 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 493-876 |
| Cow position: | chr19:15942079-15942462 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 118, 80 |
| Conread position: | 497-802 |
| Cow position: | chr19:53480605-53480925 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 14, 28 |
| Conread position: | 500-799 |
| Cow position: | chr19:24307879-24308186 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 88, 21 |
| Conread position: | 500-810 |
| Cow position: | chr19:12911216-12911529 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 163, 13 |
| Conread position: | 502-784 |
| Cow position: | chr19:16808984-16808695 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 120, 20 |
| Conread position: | 503-683 |
| Cow position: | chr19:36205014-36205193 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 18 |
| Conread position: | 503-694 |
| Cow position: | chr19:35876696-35876512 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 160, 18 |
| Conread position: | 503-802 |
| Cow position: | chr19:43673578-43673891 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 100, 11 |
| Conread position: | 503-837 |
| Cow position: | chr19:32417166-32416827 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 108, 18 |
| Conread position: | 503-853 |
| Cow position: | chr19:40079601-40079251 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 242 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 503-876 |
| Cow position: | chr19:17247980-17247603 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 252 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 107, 17 |
| Conread position: | 503-876 |
| Cow position: | chr19:33022474-33022093 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 160, 19 |
| Conread position: | 503-891 |
| Cow position: | chr19:41784882-41785256 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 37, 11 |
| Conread position: | 504-876 |
| Cow position: | chr19:46299019-46298638 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 79, 9 |
| Conread position: | 505-777 |
| Cow position: | chr19:40219540-40219812 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 17 |
| Conread position: | 505-876 |
| Cow position: | chr19:21356028-21356409 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 506-809 |
| Cow position: | chr19:1631388-1631690 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 157, 16 |
| Conread position: | 507-801 |
| Cow position: | chr19:50669492-50669194 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 100, 64 |
| Conread position: | 508-684 |
| Cow position: | chr19:15044640-15044465 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 90, 19 |
| Conread position: | 508-779 |
| Cow position: | chr19:29558899-29558628 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 14, 68 |
| Conread position: | 508-791 |
| Cow position: | chr19:17455102-17455386 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 155, 11 |
| Conread position: | 508-821 |
| Cow position: | chr19:18223616-18223930 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 93, 13 |
| Conread position: | 508-839 |
| Cow position: | chr19:6003086-6002742 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 508-876 |
| Cow position: | chr19:29630378-29630752 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 9, 15 |
| Conread position: | 509-806 |
| Cow position: | chr19:11098013-11098310 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 17, 68 |
| Conread position: | 509-876 |
| Cow position: | chr19:39213566-39213930 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 13 |
| Conread position: | 510-877 |
| Cow position: | chr19:14726242-14726597 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 256 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 513-654 |
| Cow position: | chr19:12284326-12284466 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 513-877 |
| Cow position: | chr19:32641666-32641296 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 80, 54 |
| Conread position: | 514-681 |
| Cow position: | chr19:12573369-12573535 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 108, 58 |
| Conread position: | 514-742 |
| Cow position: | chr19:6003361-6003131 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 160 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 90, 16 |
| Conread position: | 514-873 |
| Cow position: | chr19:6357266-6357625 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 149, 8 |
| Conread position: | 514-874 |
| Cow position: | chr19:15137283-15137637 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 247 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 289, 58 |
| Conread position: | 520-898 |
| Cow position: | chr19:31280645-31280264 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 33 |
| Conread position: | 521-874 |
| Cow position: | chr19:18023184-18023536 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 139, 34 |
| Conread position: | 523-876 |
| Cow position: | chr19:3583787-3584138 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 243 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 71, 49 |
| Conread position: | 525-691 |
| Cow position: | chr19:7606520-7606689 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 33, 44 |
| Conread position: | 525-828 |
| Cow position: | chr19:21292829-21292527 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 204 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 143, 47 |
| Conread position: | 525-870 |
| Cow position: | chr19:41851072-41851431 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 235 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 525-890 |
| Cow position: | chr19:6177713-6177339 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 246 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 8, 51 |
| Conread position: | 525-890 |
| Cow position: | chr19:12326226-12326600 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 97, 39 |
| Conread position: | 526-799 |
| Cow position: | chr19:49624318-49624589 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 530-876 |
| Cow position: | chr19:36997256-36997611 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 42 |
| Conread position: | 534-876 |
| Cow position: | chr19:13055962-13056313 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 91, 36 |
| Conread position: | 534-876 |
| Cow position: | chr19:35973969-35973621 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 103, 12 |
| Conread position: | 554-850 |
| Cow position: | chr19:41281568-41281255 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 554-888 |
| Cow position: | chr19:46000685-46001016 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 109, 18 |
| Conread position: | 555-815 |
| Cow position: | chr19:21415974-21415709 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 18 |
| Conread position: | 555-890 |
| Cow position: | chr19:34419121-34419464 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 57, 17 |
| Conread position: | 556-865 |
| Cow position: | chr19:27422450-27422127 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 59, 16 |
| Conread position: | 558-875 |
| Cow position: | chr19:34170751-34170423 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 72, 17 |
| Conread position: | 559-860 |
| Cow position: | chr19:18368181-18368491 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 560-876 |
| Cow position: | chr19:40365343-40365666 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 229 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 64, 13 |
| Conread position: | 560-876 |
| Cow position: | chr19:43414295-43414620 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 65, 7 |
| Conread position: | 561-833 |
| Cow position: | chr19:36705095-36705379 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 101, 11 |
| Conread position: | 561-876 |
| Cow position: | chr19:21144252-21143931 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 221 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 562-876 |
| Cow position: | chr19:49805037-49805357 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 562-893 |
| Cow position: | chr19:20644735-20644390 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 248 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 45, 15 |
| Conread position: | 570-876 |
| Cow position: | chr19:39795950-39795635 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 227 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 71 |
| Conread position: | 571-875 |
| Cow position: | chr19:18394202-18394509 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 222 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 36 |
| Conread position: | 572-876 |
| Cow position: | chr19:15869913-15870229 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 595-899 |
| Cow position: | chr19:42994160-42993854 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 212 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 22, 12 |
| Conread position: | 621-833 |
| Cow position: | chr19:16842965-16843190 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 157 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 650-876 |
| Cow position: | chr19:3186816-3186582 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 10, 49 |
| Conread position: | 650-876 |
| Cow position: | chr19:36782569-36782795 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 650-889 |
| Cow position: | chr19:21243263-21243014 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 14, 136 |
| Conread position: | 655-877 |
| Cow position: | chr19:39941691-39941917 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 8, 35 |
| Conread position: | 664-876 |
| Cow position: | chr19:28974951-28974727 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 159 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 20 |
| Conread position: | 713-874 |
| Cow position: | chr19:26096955-26096791 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 88, 7 |
| Conread position: | 715-879 |
| Cow position: | chr19:55226642-55226806 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 133, 15 |
| Conread position: | 719-894 |
| Cow position: | chr19:8365312-8365489 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 11, 164 |
| Conread position: | 725-876 |
| Cow position: | chr19:21254267-21254425 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
Show alignments to all cow chromosomes.