Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 489-686 |
| Cow position: | chr21:1177242-1177440 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 136, 82 |
| Conread position: | 500-834 |
| Cow position: | chr21:35642952-35643304 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 502-874 |
| Cow position: | chr21:19623600-19623214 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 10, 26 |
| Conread position: | 502-877 |
| Cow position: | chr21:35439158-35438792 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 45, 11 |
| Conread position: | 503-642 |
| Cow position: | chr21:29499660-29499523 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 119, 11 |
| Conread position: | 503-872 |
| Cow position: | chr21:1264454-1264080 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 504-846 |
| Cow position: | chr21:19533082-19533420 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 18 |
| Conread position: | 504-876 |
| Cow position: | chr21:11076128-11076496 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 504-889 |
| Cow position: | chr21:29078368-29078768 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 157, 18 |
| Conread position: | 505-859 |
| Cow position: | chr21:20316154-20315801 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 507-781 |
| Cow position: | chr21:44344079-44344358 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 100, 63 |
| Conread position: | 507-800 |
| Cow position: | chr21:34767754-34767452 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 100, 14 |
| Conread position: | 507-873 |
| Cow position: | chr21:13295285-13294922 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 38, 21 |
| Conread position: | 508-860 |
| Cow position: | chr21:40725629-40725981 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 243 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 59, 14 |
| Conread position: | 508-874 |
| Cow position: | chr21:4940674-4940326 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 223, 10 |
| Conread position: | 509-876 |
| Cow position: | chr21:15319444-15319813 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 258 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 192, 11 |
| Conread position: | 510-656 |
| Cow position: | chr21:1759878-1760022 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 513-875 |
| Cow position: | chr21:35600899-35600532 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 109, 9 |
| Conread position: | 514-876 |
| Cow position: | chr21:20229741-20230109 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 92, 8 |
| Conread position: | 520-893 |
| Cow position: | chr21:16117585-16117968 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 44, 32 |
| Conread position: | 522-893 |
| Cow position: | chr21:15944659-15944290 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 141, 24 |
| Conread position: | 525-685 |
| Cow position: | chr21:29631726-29631563 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 525-860 |
| Cow position: | chr21:40648356-40648011 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 86, 31 |
| Conread position: | 525-876 |
| Cow position: | chr21:7697449-7697084 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 140, 47 |
| Conread position: | 528-876 |
| Cow position: | chr21:25630914-25630567 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 529-809 |
| Cow position: | chr21:46763983-46763701 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 530-890 |
| Cow position: | chr21:16480431-16480810 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 57, 42 |
| Conread position: | 556-875 |
| Cow position: | chr21:22902272-22902606 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 557-832 |
| Cow position: | chr21:34756890-34757162 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 558-890 |
| Cow position: | chr21:39385058-39385403 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 25 |
| Conread position: | 560-851 |
| Cow position: | chr21:5092660-5092962 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 562-860 |
| Cow position: | chr21:16981713-16981400 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 52, 11 |
| Conread position: | 572-876 |
| Cow position: | chr21:21127001-21126680 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 574-875 |
| Cow position: | chr21:15603865-15603565 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 89, 15 |
| Conread position: | 610-876 |
| Cow position: | chr21:29769172-29769442 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 51, 114 |
| Conread position: | 611-865 |
| Cow position: | chr21:13531804-13532065 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 19, 39 |
| Conread position: | 637-890 |
| Cow position: | chr21:23675395-23675133 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 23, 211 |
| Conread position: | 650-875 |
| Cow position: | chr21:34394486-34394710 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 685-876 |
| Cow position: | chr21:28173250-28173446 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 40, 23 |
| Conread position: | 722-893 |
| Cow position: | chr21:15913613-15913438 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 8, 41 |
Show alignments to all cow chromosomes.