Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 486-876 |
| Cow position: | chr25:5254373-5253966 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 22 |
| Conread position: | 499-876 |
| Cow position: | chr25:5141402-5141797 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 9 |
| Conread position: | 500-827 |
| Cow position: | chr25:13950388-13950707 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 502-876 |
| Cow position: | chr25:15206294-15205918 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 104, 25 |
| Conread position: | 503-876 |
| Cow position: | chr25:4001232-4000857 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 104, 11 |
| Conread position: | 503-876 |
| Cow position: | chr25:4258696-4259078 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 86, 19 |
| Conread position: | 503-882 |
| Cow position: | chr25:386234-385851 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 503-889 |
| Cow position: | chr25:12158844-12159250 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 277 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 104, 68 |
| Conread position: | 505-813 |
| Cow position: | chr25:9870299-9870612 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 112, 8 |
| Conread position: | 508-796 |
| Cow position: | chr25:35324320-35324611 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 209 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 102, 14 |
| Conread position: | 508-876 |
| Cow position: | chr25:24120907-24121274 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 508-876 |
| Cow position: | chr25:25547709-25547342 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 261 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 508-877 |
| Cow position: | chr25:4061757-4061380 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 103, 19 |
| Conread position: | 508-899 |
| Cow position: | chr25:2196590-2196183 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 286 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 509-839 |
| Cow position: | chr25:3896207-3895872 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 118, 13 |
| Conread position: | 509-876 |
| Cow position: | chr25:18742462-18742828 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 96, 13 |
| Conread position: | 509-877 |
| Cow position: | chr25:9900325-9899951 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 40, 25 |
| Conread position: | 510-789 |
| Cow position: | chr25:34325472-34325751 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 147, 17 |
| Conread position: | 512-810 |
| Cow position: | chr25:19529701-19529393 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 96, 10 |
| Conread position: | 512-846 |
| Cow position: | chr25:23835944-23836293 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 72, 10 |
| Conread position: | 512-863 |
| Cow position: | chr25:17449420-17449774 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 10 |
| Conread position: | 519-876 |
| Cow position: | chr25:11836617-11836244 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 254 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 87, 53 |
| Conread position: | 522-874 |
| Cow position: | chr25:11920184-11920551 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 259 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 523-796 |
| Cow position: | chr25:2904576-2904853 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 525-857 |
| Cow position: | chr25:28442381-28442720 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 82, 16 |
| Conread position: | 525-876 |
| Cow position: | chr25:15930930-15930573 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 246 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 525-893 |
| Cow position: | chr25:33008584-33008203 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 255 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 30, 14 |
| Conread position: | 526-871 |
| Cow position: | chr25:28243073-28242712 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 245 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 58, 47 |
| Conread position: | 534-870 |
| Cow position: | chr25:7516598-7516948 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 65, 16 |
| Conread position: | 554-876 |
| Cow position: | chr25:15004632-15004309 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 62, 19 |
| Conread position: | 554-890 |
| Cow position: | chr25:24668556-24668891 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 30, 18 |
| Conread position: | 555-857 |
| Cow position: | chr25:41410289-41409981 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 52, 17 |
| Conread position: | 560-857 |
| Cow position: | chr25:41306359-41306662 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 560-860 |
| Cow position: | chr25:3005392-3005681 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 206 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 172, 13 |
| Conread position: | 560-871 |
| Cow position: | chr25:4371470-4371794 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 573-796 |
| Cow position: | chr25:17646797-17646570 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 575-815 |
| Cow position: | chr25:13053027-13053272 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 577-876 |
| Cow position: | chr25:18618642-18618333 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 20, 11 |
| Conread position: | 584-876 |
| Cow position: | chr25:10356396-10356702 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 8, 110 |
| Conread position: | 616-889 |
| Cow position: | chr25:23863355-23863625 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 43 |
| Conread position: | 621-886 |
| Cow position: | chr25:14843304-14843574 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 33, 14 |
| Conread position: | 706-876 |
| Cow position: | chr25:30412019-30412189 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 105, 20 |
| Conread position: | 714-876 |
| Cow position: | chr25:23844934-23845098 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 720-876 |
| Cow position: | chr25:23759347-23759504 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 721-876 |
| Cow position: | chr25:5246074-5245916 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 10, 28 |
Show alignments to all cow chromosomes.