Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 484-877 |
| Cow position: | chr28:24337338-24337746 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 70 |
| Conread position: | 491-815 |
| Cow position: | chr28:23683025-23683344 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 59, 31 |
| Conread position: | 501-832 |
| Cow position: | chr28:22246399-22246058 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 236 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 110, 19 |
| Conread position: | 501-876 |
| Cow position: | chr28:22843814-22843427 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 144, 70 |
| Conread position: | 503-699 |
| Cow position: | chr28:24306978-24307170 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 106, 19 |
| Conread position: | 503-837 |
| Cow position: | chr28:21618896-21618545 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 236 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 108, 19 |
| Conread position: | 503-856 |
| Cow position: | chr28:33150376-33150732 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 504-784 |
| Cow position: | chr28:3544400-3544679 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 154, 18 |
| Conread position: | 505-876 |
| Cow position: | chr28:22668955-22668575 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 261 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 143, 17 |
| Conread position: | 508-859 |
| Cow position: | chr28:4441599-4441248 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 241 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 55, 14 |
| Conread position: | 511-878 |
| Cow position: | chr28:24317659-24318032 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 191, 11 |
| Conread position: | 512-788 |
| Cow position: | chr28:17127700-17127410 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 95, 15 |
| Conread position: | 513-828 |
| Cow position: | chr28:20941593-20941922 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 40, 9 |
| Conread position: | 514-825 |
| Cow position: | chr28:28903006-28903337 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 69, 8 |
| Conread position: | 514-876 |
| Cow position: | chr28:23126205-23126576 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 254 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 95, 8 |
| Conread position: | 520-876 |
| Cow position: | chr28:31356712-31356356 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 237 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 7, 53 |
| Conread position: | 522-885 |
| Cow position: | chr28:11078711-11078346 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 525-815 |
| Cow position: | chr28:13873080-13873378 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 137, 52 |
| Conread position: | 525-873 |
| Cow position: | chr28:33432670-33432311 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 82, 48 |
| Conread position: | 525-876 |
| Cow position: | chr28:16559200-16558844 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 78, 47 |
| Conread position: | 525-881 |
| Cow position: | chr28:22645914-22645563 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 82, 25 |
| Conread position: | 527-876 |
| Cow position: | chr28:23097369-23097006 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 256 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 80, 45 |
| Conread position: | 533-802 |
| Cow position: | chr28:23834011-23833736 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 535-890 |
| Cow position: | chr28:22807437-22807072 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 14, 66 |
| Conread position: | 538-873 |
| Cow position: | chr28:22610694-22610342 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 34 |
| Conread position: | 547-780 |
| Cow position: | chr28:23095249-23095016 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 111, 25 |
| Conread position: | 554-820 |
| Cow position: | chr28:22270911-22271192 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 53, 19 |
| Conread position: | 554-845 |
| Cow position: | chr28:27680306-27680011 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 560-877 |
| Cow position: | chr28:19467367-19467049 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 50, 38 |
| Conread position: | 564-899 |
| Cow position: | chr28:11601664-11602012 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 571-834 |
| Cow position: | chr28:31857333-31857079 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 34, 70 |
| Conread position: | 571-876 |
| Cow position: | chr28:23020545-23020841 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 54, 19 |
| Conread position: | 572-861 |
| Cow position: | chr28:22270429-22270123 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 573-862 |
| Cow position: | chr28:21537171-21537463 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 575-884 |
| Cow position: | chr28:23238595-23238293 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 102, 36 |
| Conread position: | 610-876 |
| Cow position: | chr28:20185855-20186134 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 14 |
| Conread position: | 610-893 |
| Cow position: | chr28:27355414-27355707 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 611-879 |
| Cow position: | chr28:16195349-16195616 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 88 |
| Conread position: | 611-899 |
| Cow position: | chr28:23918801-23919091 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 623-899 |
| Cow position: | chr28:20773612-20773894 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 57 |
| Conread position: | 634-874 |
| Cow position: | chr28:22274549-22274788 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 16 |
| Conread position: | 715-877 |
| Cow position: | chr28:9084155-9083994 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 77, 5 |
| Conread position: | 723-874 |
| Cow position: | chr28:26392541-26392385 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 0 |
Show alignments to all cow chromosomes.