Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 495-876 |
| Cow position: | chr4:8567214-8567608 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 7, 85 |
| Conread position: | 499-877 |
| Cow position: | chr4:39915033-39914634 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 500-880 |
| Cow position: | chr4:1985184-1984790 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 501-876 |
| Cow position: | chr4:45994783-45994392 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 6, 77 |
| Conread position: | 503-799 |
| Cow position: | chr4:54511383-54511680 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 142, 19 |
| Conread position: | 504-801 |
| Cow position: | chr4:49916771-49916455 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 110, 18 |
| Conread position: | 504-875 |
| Cow position: | chr4:52713735-52713373 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 504-890 |
| Cow position: | chr4:11150522-11150120 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 118, 15 |
| Conread position: | 504-899 |
| Cow position: | chr4:6628581-6628178 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 275 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 145, 18 |
| Conread position: | 505-860 |
| Cow position: | chr4:36338114-36337749 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 100, 17 |
| Conread position: | 505-871 |
| Cow position: | chr4:28778664-28778289 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 68 |
| Conread position: | 506-801 |
| Cow position: | chr4:40052125-40051820 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 507-801 |
| Cow position: | chr4:36663125-36663428 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 508-659 |
| Cow position: | chr4:64721732-64721582 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 99, 54 |
| Conread position: | 508-876 |
| Cow position: | chr4:41168705-41168324 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 508-893 |
| Cow position: | chr4:39935765-39935391 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 509-828 |
| Cow position: | chr4:38315236-38315565 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 18, 65 |
| Conread position: | 509-876 |
| Cow position: | chr4:23888134-23888505 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 105, 13 |
| Conread position: | 510-890 |
| Cow position: | chr4:2650013-2649635 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 62 |
| Conread position: | 511-875 |
| Cow position: | chr4:53665806-53665433 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 259 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 61, 10 |
| Conread position: | 511-878 |
| Cow position: | chr4:37946767-37947148 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 11 |
| Conread position: | 512-862 |
| Cow position: | chr4:34617433-34617801 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 95, 15 |
| Conread position: | 513-695 |
| Cow position: | chr4:52266601-52266782 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 132, 9 |
| Conread position: | 513-893 |
| Cow position: | chr4:49907786-49908177 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 265 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 76, 9 |
| Conread position: | 514-692 |
| Cow position: | chr4:64690541-64690721 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 93, 8 |
| Conread position: | 514-875 |
| Cow position: | chr4:10092042-10092409 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 104, 52 |
| Conread position: | 517-856 |
| Cow position: | chr4:22832879-22833228 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 132, 56 |
| Conread position: | 520-831 |
| Cow position: | chr4:23953537-23953861 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 54 |
| Conread position: | 520-860 |
| Cow position: | chr4:11860528-11860866 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 23, 31 |
| Conread position: | 522-773 |
| Cow position: | chr4:38695058-38694795 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 51 |
| Conread position: | 522-876 |
| Cow position: | chr4:44061790-44062163 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 85, 50 |
| Conread position: | 522-888 |
| Cow position: | chr4:10042701-10042330 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 245 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 141, 25 |
| Conread position: | 522-890 |
| Cow position: | chr4:58160831-58161206 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 100, 50 |
| Conread position: | 523-815 |
| Cow position: | chr4:37080407-37080697 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 84, 46 |
| Conread position: | 524-852 |
| Cow position: | chr4:26703306-26703650 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 241 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 83, 48 |
| Conread position: | 524-876 |
| Cow position: | chr4:66183497-66183869 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 253 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 87, 48 |
| Conread position: | 525-874 |
| Cow position: | chr4:34054103-34054431 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 47 |
| Conread position: | 525-876 |
| Cow position: | chr4:11228382-11228026 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 82, 47 |
| Conread position: | 529-893 |
| Cow position: | chr4:31013997-31014364 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 530-893 |
| Cow position: | chr4:55795166-55794793 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 547-860 |
| Cow position: | chr4:34028383-34028058 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 27, 67 |
| Conread position: | 548-834 |
| Cow position: | chr4:19833469-19833189 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 555-865 |
| Cow position: | chr4:39406168-39406491 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 555-875 |
| Cow position: | chr4:49851770-49852091 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 217 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 17 |
| Conread position: | 555-876 |
| Cow position: | chr4:47979032-47978713 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 220 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 560-876 |
| Cow position: | chr4:49667506-49667826 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 560-880 |
| Cow position: | chr4:12845247-12844930 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 213 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 10 |
| Conread position: | 561-893 |
| Cow position: | chr4:22391284-22391622 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 11 |
| Conread position: | 562-796 |
| Cow position: | chr4:37651190-37650948 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 563-815 |
| Cow position: | chr4:46054456-46054720 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 564-875 |
| Cow position: | chr4:22696356-22696669 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 114, 8 |
| Conread position: | 572-876 |
| Cow position: | chr4:32693084-32693383 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 155 |
| Conread position: | 573-876 |
| Cow position: | chr4:47886510-47886198 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 90, 34 |
| Conread position: | 585-886 |
| Cow position: | chr4:37040557-37040245 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 22, 206 |
| Conread position: | 620-873 |
| Cow position: | chr4:22493830-22493569 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 43, 29 |
| Conread position: | 625-899 |
| Cow position: | chr4:2211745-2212020 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 634-873 |
| Cow position: | chr4:39961616-39961865 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 37, 24 |
| Conread position: | 658-890 |
| Cow position: | chr4:50874381-50874624 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 5, 235 |
| Conread position: | 717-879 |
| Cow position: | chr4:46017038-46017205 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 65 |
| Conread position: | 722-890 |
| Cow position: | chr4:27542922-27543094 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 8, 164 |
Show alignments to all cow chromosomes.