Cow genome map

Conread name: Ss1.1-Pig4-TMW8036I19.3

Conread position: 478-876
Cow position: chr5:60411240-60410846 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 271
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 128, 44

Conread position: 494-876
Cow position: chr5:5526424-5526811 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 276
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 166, 28

Conread position: 500-845
Cow position: chr5:51725193-51724850 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 234
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 14, 23

Conread position: 501-680
Cow position: chr5:5063408-5063229 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 136
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 14, 58

Conread position: 502-876
Cow position: chr5:3466797-3467184 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 268
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 16, 20

Conread position: 503-788
Cow position: chr5:21405235-21404940 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 192
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 160, 69

Conread position: 503-874
Cow position: chr5:75007927-75008292 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 246
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 11, 16

Conread position: 503-876
Cow position: chr5:27898961-27899337 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 19

Conread position: 503-893
Cow position: chr5:62205625-62205218 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 288
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 52, 44

Conread position: 504-873
Cow position: chr5:16959301-16959678 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 258
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 103, 18

Conread position: 504-876
Cow position: chr5:35339597-35339219 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 255
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 30, 18

Conread position: 505-686
Cow position: chr5:35577576-35577749 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 508-686
Cow position: chr5:26224889-26225069 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 11, 33

Conread position: 508-724
Cow position: chr5:51541587-51541798 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 9, 15

Conread position: 508-750
Cow position: chr5:62544407-62544153 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 181
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 85, 14

Conread position: 508-860
Cow position: chr5:20383804-20383440 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 253
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 102, 14

Conread position: 508-871
Cow position: chr5:33176206-33175830 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 267
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 110, 14

Conread position: 508-872
Cow position: chr5:45601607-45601976 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 14

Conread position: 508-876
Cow position: chr5:41019393-41019778 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 268
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 118, 14

Conread position: 508-889
Cow position: chr5:55678501-55678115 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 269
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 42, 14

Conread position: 508-890
Cow position: chr5:8420431-8420800 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 254
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 99, 14

Conread position: 508-890
Cow position: chr5:39751125-39750731 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 255
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 45

Conread position: 512-890
Cow position: chr5:27534208-27534600 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 95, 10

Conread position: 514-788
Cow position: chr5:69693837-69693571 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 93, 8

Conread position: 517-890
Cow position: chr5:53360119-53360487 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 262
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 91, 5

Conread position: 522-724
Cow position: chr5:34951316-34951110 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 137, 9

Conread position: 524-890
Cow position: chr5:21593289-21592935 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 244
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 207, 48

Conread position: 525-821
Cow position: chr5:54609260-54608953 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 206
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 82, 47

Conread position: 525-860
Cow position: chr5:19269129-19269466 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 236
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 121, 47

Conread position: 525-873
Cow position: chr5:70104540-70104195 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 228
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 133, 47

Conread position: 525-876
Cow position: chr5:69879661-69879291 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 241
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 27, 46

Conread position: 525-877
Cow position: chr5:64841318-64841671 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 239
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 16, 37

Conread position: 526-828
Cow position: chr5:44004060-44004370 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 203
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 95, 47

Conread position: 530-876
Cow position: chr5:61102389-61102023 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 246
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 42, 19

Conread position: 531-876
Cow position: chr5:50788792-50788444 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 248
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 14, 43

Conread position: 540-890
Cow position: chr5:31008685-31008334 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 116, 32

Conread position: 555-815
Cow position: chr5:41200978-41201244 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 195
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 62, 17

Conread position: 555-873
Cow position: chr5:60710396-60710731 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 218
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 48, 17

Conread position: 555-876
Cow position: chr5:46317307-46317633 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 217
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 108, 17

Conread position: 557-876
Cow position: chr5:20693121-20693441 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 209
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 15

Conread position: 558-889
Cow position: chr5:66575394-66575046 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 245
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 53, 16

Conread position: 560-769
Cow position: chr5:17541359-17541145 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 147
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 47, 12

Conread position: 560-828
Cow position: chr5:58731501-58731767 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 12, 105

Conread position: 560-875
Cow position: chr5:24543322-24543647 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 220
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 50, 12

Conread position: 560-876
Cow position: chr5:27101384-27101056 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 218
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 103, 12

Conread position: 560-876
Cow position: chr5:74030057-74029724 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 227
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 47, 12

Conread position: 560-899
Cow position: chr5:22889995-22890348 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 244
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 51, 12

Conread position: 562-890
Cow position: chr5:18845337-18845003 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 44, 10

Conread position: 563-876
Cow position: chr5:25254821-25254505 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 209
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 10

Conread position: 573-876
Cow position: chr5:51192750-51192435 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 34, 0

Conread position: 575-876
Cow position: chr5:70959416-70959723 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 207
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 43

Conread position: 581-887
Cow position: chr5:64747373-64747683 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 208
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 26

Conread position: 583-875
Cow position: chr5:32643729-32643438 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 204
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 41

Conread position: 610-876
Cow position: chr5:62268637-62268358 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 197
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 12, 185

Conread position: 610-877
Cow position: chr5:62278802-62278526 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 181
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 621-859
Cow position: chr5:54329361-54329124 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 42, 91

Conread position: 631-876
Cow position: chr5:4084049-4084304 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 18

Conread position: 631-883
Cow position: chr5:69447948-69448209 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 176
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 729-890
Cow position: chr5:35320077-35320238 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 119, 127

Conread position: 744-876
Cow position: chr5:56656726-56656862 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 68, 0

Show alignments to all cow chromosomes.