Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 499-876 |
| Cow position: | chr6:65386037-65386439 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 18, 77 |
| Conread position: | 502-857 |
| Cow position: | chr6:31531197-31530830 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 104, 11 |
| Conread position: | 503-864 |
| Cow position: | chr6:20838286-20837922 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 260 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 116, 19 |
| Conread position: | 504-876 |
| Cow position: | chr6:24044217-24044613 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 273 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 504-892 |
| Cow position: | chr6:18573084-18572699 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 27, 66 |
| Conread position: | 505-661 |
| Cow position: | chr6:37447695-37447851 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 14, 57 |
| Conread position: | 505-876 |
| Cow position: | chr6:19498451-19498073 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 86, 17 |
| Conread position: | 506-810 |
| Cow position: | chr6:37728642-37728955 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 95, 44 |
| Conread position: | 508-796 |
| Cow position: | chr6:13322985-13323286 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 508-893 |
| Cow position: | chr6:53101207-53100817 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 99, 14 |
| Conread position: | 510-792 |
| Cow position: | chr6:19346670-19346395 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 12 |
| Conread position: | 511-850 |
| Cow position: | chr6:13584381-13584036 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 513-876 |
| Cow position: | chr6:66975520-66975140 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 95, 9 |
| Conread position: | 514-874 |
| Cow position: | chr6:60936527-60936166 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 515-893 |
| Cow position: | chr6:67551781-67552170 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 7 |
| Conread position: | 522-876 |
| Cow position: | chr6:1908199-1908556 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 86, 25 |
| Conread position: | 522-876 |
| Cow position: | chr6:51371275-51370889 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 270 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 103, 50 |
| Conread position: | 525-841 |
| Cow position: | chr6:56863068-56862744 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 75, 47 |
| Conread position: | 525-867 |
| Cow position: | chr6:50648278-50647934 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 526-798 |
| Cow position: | chr6:35237889-35238170 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 190 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 81, 46 |
| Conread position: | 526-893 |
| Cow position: | chr6:21682617-21682259 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 531-875 |
| Cow position: | chr6:38610635-38610286 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 86, 19 |
| Conread position: | 554-876 |
| Cow position: | chr6:35205488-35205817 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 66, 19 |
| Conread position: | 560-876 |
| Cow position: | chr6:17886774-17887094 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 560-876 |
| Cow position: | chr6:20269078-20269413 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 24, 13 |
| Conread position: | 560-876 |
| Cow position: | chr6:32498057-32497735 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 560-899 |
| Cow position: | chr6:31437381-31437025 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 245 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 573-874 |
| Cow position: | chr6:18979948-18979640 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 74 |
| Conread position: | 576-876 |
| Cow position: | chr6:32461465-32461778 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 221 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 5, 88 |
| Conread position: | 585-876 |
| Cow position: | chr6:47661805-47661502 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 20, 131 |
| Conread position: | 587-862 |
| Cow position: | chr6:23957761-23957492 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 190 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 33, 105 |
| Conread position: | 610-893 |
| Cow position: | chr6:34694035-34693749 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 20, 53 |
| Conread position: | 616-895 |
| Cow position: | chr6:60650250-60649965 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 47, 150 |
| Conread position: | 628-876 |
| Cow position: | chr6:62982978-62982713 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 638-877 |
| Cow position: | chr6:7127834-7128082 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 16 |
| Conread position: | 716-876 |
| Cow position: | chr6:39791783-39791622 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 92, 13 |
| Conread position: | 719-877 |
| Cow position: | chr6:19575102-19575265 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 0 |
Show alignments to all cow chromosomes.