Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I19.3 |
| Conread position: | 499-738 |
| Cow position: | chr9:24884673-24884908 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 127, 30 |
| Conread position: | 500-662 |
| Cow position: | chr9:39596085-39596247 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 21 |
| Conread position: | 503-828 |
| Cow position: | chr9:47432748-47433075 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 242 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 103, 25 |
| Conread position: | 504-873 |
| Cow position: | chr9:56766476-56766865 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 265 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 508-832 |
| Cow position: | chr9:19885054-19885398 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 32, 14 |
| Conread position: | 508-890 |
| Cow position: | chr9:22110864-22111253 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 509-860 |
| Cow position: | chr9:32582993-32582644 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 229 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 19, 5 |
| Conread position: | 511-876 |
| Cow position: | chr9:55961721-55962086 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 104, 19 |
| Conread position: | 514-860 |
| Cow position: | chr9:40424879-40425236 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 240 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 517-876 |
| Cow position: | chr9:5867676-5868045 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 180, 5 |
| Conread position: | 517-876 |
| Cow position: | chr9:58246512-58246123 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 54, 5 |
| Conread position: | 517-889 |
| Cow position: | chr9:43234832-43235210 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 520-815 |
| Cow position: | chr9:54278612-54278907 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 46 |
| Conread position: | 521-871 |
| Cow position: | chr9:58545943-58545592 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 82, 50 |
| Conread position: | 522-876 |
| Cow position: | chr9:23837620-23837260 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 89, 38 |
| Conread position: | 523-875 |
| Cow position: | chr9:9458177-9458539 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 268 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 83, 23 |
| Conread position: | 525-871 |
| Cow position: | chr9:13290671-13291023 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 31 |
| Conread position: | 525-887 |
| Cow position: | chr9:47403452-47403811 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 174, 46 |
| Conread position: | 527-860 |
| Cow position: | chr9:54342946-54342629 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 136, 46 |
| Conread position: | 528-703 |
| Cow position: | chr9:52686390-52686212 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 32 |
| Conread position: | 554-876 |
| Cow position: | chr9:49963101-49963438 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 554-877 |
| Cow position: | chr9:33258942-33259268 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 232 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 556-871 |
| Cow position: | chr9:20510037-20509733 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 16 |
| Conread position: | 558-864 |
| Cow position: | chr9:59995910-59996225 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 15 |
| Conread position: | 559-890 |
| Cow position: | chr9:34803181-34802832 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 14 |
| Conread position: | 560-865 |
| Cow position: | chr9:14708318-14708012 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 5, 103 |
| Conread position: | 560-874 |
| Cow position: | chr9:54660774-54660456 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 99, 13 |
| Conread position: | 564-876 |
| Cow position: | chr9:19535167-19535487 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 44, 8 |
| Conread position: | 573-892 |
| Cow position: | chr9:19068622-19068296 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 124 |
| Conread position: | 574-877 |
| Cow position: | chr9:20508778-20508469 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 214 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 37, 73 |
| Conread position: | 583-809 |
| Cow position: | chr9:60949843-60949613 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 23, 52 |
| Conread position: | 583-890 |
| Cow position: | chr9:12039105-12038789 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 80, 28 |
| Conread position: | 585-860 |
| Cow position: | chr9:34952111-34952400 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 589-877 |
| Cow position: | chr9:7537334-7537058 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 22, 76 |
| Conread position: | 609-815 |
| Cow position: | chr9:52872227-52872017 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 631-876 |
| Cow position: | chr9:50345097-50344834 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 9, 90 |
| Conread position: | 685-876 |
| Cow position: | chr9:17059495-17059691 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 719-892 |
| Cow position: | chr9:47939962-47939781 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 11, 67 |
| Conread position: | 739-876 |
| Cow position: | chr9:29853423-29853562 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 72, 40 |
Show alignments to all cow chromosomes.