Cow genome map

Conread name: Ss1.1-Pig4-TMW8036I19.3

Conread position: 422-890
Cow position: chrX:22136036-22136494 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 317
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 17, 32

Conread position: 499-860
Cow position: chrX:11847311-11846960 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 246
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 18, 24

Conread position: 499-890
Cow position: chrX:29024618-29024210 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 270
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 48, 236

Conread position: 500-867
Cow position: chrX:17562880-17563254 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 254
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 10, 30

Conread position: 501-879
Cow position: chrX:27418827-27419210 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 21

Conread position: 502-890
Cow position: chrX:26288520-26288922 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 54

Conread position: 503-674
Cow position: chrX:37946388-37946214 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 127
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 70

Conread position: 503-768
Cow position: chrX:519392-519131 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 42, 19

Conread position: 503-788
Cow position: chrX:13065544-13065838 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 213
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 108, 19

Conread position: 503-846
Cow position: chrX:18798898-18799251 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 19

Conread position: 503-874
Cow position: chrX:28701888-28701508 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 269
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 61, 19

Conread position: 503-876
Cow position: chrX:10522282-10521900 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 255
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 13, 20

Conread position: 503-876
Cow position: chrX:25362531-25362170 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 250
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 11, 20

Conread position: 503-879
Cow position: chrX:41761328-41761694 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 254
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 106, 19

Conread position: 503-890
Cow position: chrX:23485342-23484954 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 255
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 42, 47

Conread position: 504-815
Cow position: chrX:15921874-15921562 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 237
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 118, 18

Conread position: 504-815
Cow position: chrX:25341315-25340989 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 87, 9

Conread position: 504-816
Cow position: chrX:21287510-21287830 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 226
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 100, 23

Conread position: 504-889
Cow position: chrX:33673670-33674065 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 272
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 105, 14

Conread position: 504-890
Cow position: chrX:11914713-11914316 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 271
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 102, 9

Conread position: 505-693
Cow position: chrX:29433285-29433099 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 505-837
Cow position: chrX:37468734-37469080 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 505-862
Cow position: chrX:19649106-19649475 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 248
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 117, 17

Conread position: 505-875
Cow position: chrX:5122038-5121660 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 268
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 9, 19

Conread position: 505-876
Cow position: chrX:39288012-39288393 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 17

Conread position: 508-647
Cow position: chrX:20442338-20442476 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 99, 14

Conread position: 508-678
Cow position: chrX:17908524-17908691 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 138
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 40, 12

Conread position: 508-858
Cow position: chrX:489245-488888 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 249
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 19, 9

Conread position: 509-815
Cow position: chrX:34340353-34340032 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 220
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 98, 18

Conread position: 510-860
Cow position: chrX:8783718-8784076 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 235
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 88, 17

Conread position: 512-699
Cow position: chrX:42483320-42483133 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 136
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 96, 10

Conread position: 512-831
Cow position: chrX:23683330-23683003 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 219
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 95, 10

Conread position: 512-876
Cow position: chrX:874105-873721 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 260
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 12, 64

Conread position: 512-876
Cow position: chrX:4431820-4431468 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 250
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 151, 15

Conread position: 513-794
Cow position: chrX:40509987-40509709 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 111, 14

Conread position: 513-885
Cow position: chrX:26176550-26176929 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 262
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 109, 9

Conread position: 514-851
Cow position: chrX:37946740-37946386 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 252
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 88, 8

Conread position: 514-876
Cow position: chrX:34434899-34435274 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 265
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 72, 8

Conread position: 515-874
Cow position: chrX:23268043-23268409 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 263
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 38, 7

Conread position: 515-893
Cow position: chrX:19540206-19540590 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 270
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 92, 7

Conread position: 516-876
Cow position: chrX:11384845-11385213 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 262
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 103, 11

Conread position: 517-860
Cow position: chrX:10904529-10904868 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 239
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 72, 54

Conread position: 519-874
Cow position: chrX:305338-304969 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 252
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 7, 54

Conread position: 519-874
Cow position: chrX:389645-389283 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 252
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 7, 55

Conread position: 520-893
Cow position: chrX:40549753-40549382 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 263
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 6, 25

Conread position: 522-725
Cow position: chrX:19596635-19596437 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 142, 14

Conread position: 522-774
Cow position: chrX:27135173-27135435 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 184
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 85, 50

Conread position: 522-815
Cow position: chrX:39315749-39316041 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 213
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 85, 21

Conread position: 522-820
Cow position: chrX:26339748-26340061 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 89, 38

Conread position: 522-837
Cow position: chrX:46092286-46092614 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 231
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 22, 31

Conread position: 522-875
Cow position: chrX:16411022-16410656 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 261
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 61, 21

Conread position: 522-890
Cow position: chrX:42043822-42044207 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 259
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 67, 55

Conread position: 524-892
Cow position: chrX:39237140-39236778 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 255
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 44, 30

Conread position: 525-776
Cow position: chrX:8520064-8519801 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 186
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 33, 24

Conread position: 525-874
Cow position: chrX:20971068-20970701 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 246
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 84, 48

Conread position: 525-876
Cow position: chrX:8137173-8137524 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 258
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 82, 35

Conread position: 525-876
Cow position: chrX:42907246-42906894 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 245
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 80, 20

Conread position: 525-884
Cow position: chrX:20655019-20654647 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 11

Conread position: 527-786
Cow position: chrX:34655202-34655470 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 182
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 29, 45

Conread position: 530-877
Cow position: chrX:18540573-18540924 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 241
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 92, 29

Conread position: 533-815
Cow position: chrX:14625918-14625633 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 56, 38

Conread position: 534-860
Cow position: chrX:36291532-36291878 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 228
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 31, 16

Conread position: 534-880
Cow position: chrX:42182833-42182486 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 237
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 15, 21

Conread position: 540-850
Cow position: chrX:25191528-25191212 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 221
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 11, 31

Conread position: 547-821
Cow position: chrX:11930906-11930629 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 188
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 67, 25

Conread position: 548-876
Cow position: chrX:508047-508379 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 224
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 82, 24

Conread position: 549-890
Cow position: chrX:4664493-4664856 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 247
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 58, 5

Conread position: 554-853
Cow position: chrX:19656765-19657079 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 219
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 0

Conread position: 554-890
Cow position: chrX:19807824-19807484 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 18

Conread position: 555-850
Cow position: chrX:26610352-26610041 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 213
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 52, 17

Conread position: 555-874
Cow position: chrX:11908478-11908793 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 30, 22

Conread position: 555-876
Cow position: chrX:5507783-5507450 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 221
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 43, 18

Conread position: 557-824
Cow position: chrX:30074890-30074613 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 192
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 9, 16

Conread position: 557-834
Cow position: chrX:37906097-37905809 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 11

Conread position: 557-874
Cow position: chrX:31839612-31839286 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 215
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 54, 16

Conread position: 560-833
Cow position: chrX:18690796-18691080 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 47, 12

Conread position: 560-850
Cow position: chrX:10089275-10088970 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 204
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 18, 30

Conread position: 560-875
Cow position: chrX:28863673-28863987 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 47, 12

Conread position: 560-888
Cow position: chrX:7389691-7390016 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 224
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 34, 12

Conread position: 560-893
Cow position: chrX:18793900-18794244 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 231
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 57, 46

Conread position: 560-893
Cow position: chrX:20591090-20590738 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 24, 13

Conread position: 561-831
Cow position: chrX:25046430-25046148 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 49, 11

Conread position: 563-890
Cow position: chrX:17968751-17969087 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 228
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 141, 9

Conread position: 571-859
Cow position: chrX:23888161-23887868 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 210
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 39, 8

Conread position: 571-893
Cow position: chrX:23081379-23081051 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 223
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 65, 38

Conread position: 575-876
Cow position: chrX:33964312-33964635 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 224
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 32, 73

Conread position: 577-876
Cow position: chrX:37454246-37453936 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 204
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 29, 47

Conread position: 578-876
Cow position: chrX:18459365-18459683 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 33, 0

Conread position: 578-876
Cow position: chrX:43799966-43800272 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 217
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 29, 109

Conread position: 583-876
Cow position: chrX:46374238-46374541 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 24, 267

Conread position: 583-890
Cow position: chrX:11857758-11858074 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 220
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 24, 70

Conread position: 584-875
Cow position: chrX:41232449-41232141 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 207
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 23, 69

Conread position: 587-890
Cow position: chrX:23876035-23876357 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 220
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 75, 24

Conread position: 594-860
Cow position: chrX:6683604-6683885 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 197
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 35, 46

Conread position: 618-877
Cow position: chrX:33736684-33736413 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 182
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 72, 95

Conread position: 631-877
Cow position: chrX:5111384-5111644 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 187
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 42, 0

Conread position: 632-876
Cow position: chrX:11315097-11314844 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 169
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 31, 207

Conread position: 662-876
Cow position: chrX:23932238-23932464 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 52

Conread position: 719-899
Cow position: chrX:36238617-36238430 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 12, 0

Conread position: 720-875
Cow position: chrX:25134273-25134428 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 142, 10

Show alignments to all cow chromosomes.