Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I23.3 |
| Conread position: | 1-212 |
| Cow position: | chr23:25698285-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 19, 10 |
| Conread position: | 1-290 |
| Cow position: | chr23:25698369-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 9, 23 |
| Conread position: | 1-428 |
| Cow position: | chr23:24535842-24535414 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 1-518 |
| Cow position: | chr23:24547211-24546689 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 2-212 |
| Cow position: | chr23:25723923-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-322 |
| Cow position: | chr23:24626428-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 0 |
| Conread position: | 2-374 |
| Cow position: | chr23:25698452-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 248 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 92, 102 |
| Conread position: | 3-375 |
| Cow position: | chr23:24547041-24546669 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 3-452 |
| Cow position: | chr23:24560517-24560068 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 391 |
| Conread position: | 3-474 |
| Cow position: | chr23:25626403-25626873 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 131 |
| Conread position: | 3-475 |
| Cow position: | chr23:24654070-24654535 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 0 |
| Conread position: | 3-515 |
| Cow position: | chr23:24639422-24639938 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 263, 23 |
| Conread position: | 13-303 |
| Cow position: | chr23:25660450-25660740 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 81, 99 |
| Conread position: | 13-398 |
| Cow position: | chr23:24626355-24626738 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 0 |
| Conread position: | 13-516 |
| Cow position: | chr23:24639347-24639855 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 12 |
| Conread position: | 15-516 |
| Cow position: | chr23:24639265-24639771 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 0 |
| Conread position: | 18-454 |
| Cow position: | chr23:24626276-24626712 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 21 |
| Conread position: | 19-451 |
| Cow position: | chr23:24522599-24522167 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 20-474 |
| Cow position: | chr23:25698685-25698230 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 5 |
| Conread position: | 22-224 |
| Cow position: | chr23:25626839-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 22-393 |
| Cow position: | chr23:25660375-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 11 |
| Conread position: | 22-503 |
| Cow position: | chr23:25660207-25660693 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 78 |
| Conread position: | 24-454 |
| Cow position: | chr23:25626589-25627019 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 76 |
| Conread position: | 26-425 |
| Cow position: | chr23:24535985-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 234 |
| Conread position: | 26-454 |
| Cow position: | chr23:24639612-24640040 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 26-517 |
| Cow position: | chr23:25626174-25626667 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 74 |
| Conread position: | 26-539 |
| Cow position: | chr23:24639528-24640045 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 230 |
| Conread position: | 26-557 |
| Cow position: | chr23:24547270-24546742 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 76 |
| Conread position: | 26-706 |
| Cow position: | chr23:24560830-24560141 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 113 |
| Conread position: | 28-236 |
| Cow position: | chr23:24639866-24640074 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 74, 87 |
| Conread position: | 28-452 |
| Cow position: | chr23:25698594-25698170 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 245, 234 |
| Conread position: | 28-454 |
| Cow position: | chr23:24639194-24639620 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 13 |
| Conread position: | 29-297 |
| Cow position: | chr23:25626762-25627030 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-299 |
| Cow position: | chr23:24546931-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 29-454 |
| Cow position: | chr23:25626093-25626518 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-454 |
| Cow position: | chr23:25698509-25698084 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 276 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 186, 201 |
| Conread position: | 29-457 |
| Cow position: | chr23:24547099-24546671 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 65 |
| Conread position: | 29-457 |
| Cow position: | chr23:24639699-24640126 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 247 |
| Conread position: | 29-474 |
| Cow position: | chr23:25660298-25660745 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 424, 0 |
| Conread position: | 29-493 |
| Cow position: | chr23:24522670-24522206 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 69 |
| Conread position: | 29-515 |
| Cow position: | chr23:25626009-25626500 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 239 |
| Conread position: | 30-296 |
| Cow position: | chr23:25723979-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-475 |
| Cow position: | chr23:24560574-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 396 |
| Conread position: | 30-524 |
| Cow position: | chr23:24560910-24560410 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 0 |
| Conread position: | 30-525 |
| Cow position: | chr23:24560658-24560157 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 425, 0 |
| Conread position: | 30-526 |
| Cow position: | chr23:25626514-25627013 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 73 |
| Conread position: | 35-373 |
| Cow position: | chr23:25724058-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 40-523 |
| Cow position: | chr23:24522825-24522341 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 127, 35 |
| Conread position: | 54-507 |
| Cow position: | chr23:24560718-24560260 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 402, 0 |
| Conread position: | 59-403 |
| Cow position: | chr23:24654042-24654386 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 60-516 |
| Cow position: | chr23:24547320-24546859 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 0 |
| Conread position: | 66-475 |
| Cow position: | chr23:25724111-25723703 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 400, 0 |
| Conread position: | 66-503 |
| Cow position: | chr23:24536029-24535587 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 0 |
| Conread position: | 106-474 |
| Cow position: | chr23:25626002-25626372 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 113-516 |
| Cow position: | chr23:24560911-24560503 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 324, 307 |
| Conread position: | 129-503 |
| Cow position: | chr23:25660146-25660525 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 329, 345 |
| Conread position: | 129-516 |
| Cow position: | chr23:24536050-24535658 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 256 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 326, 0 |
| Conread position: | 130-423 |
| Cow position: | chr23:24521982-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 198, 194 |
| Conread position: | 130-516 |
| Cow position: | chr23:24547334-24546943 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 0 |
| Conread position: | 143-474 |
| Cow position: | chr23:24654042-24654375 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 115 |
| Conread position: | 149-505 |
| Cow position: | chr23:25625961-25626322 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 175-454 |
| Cow position: | chr23:25698699-25698420 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-525 |
| Cow position: | chr23:24626268-24626621 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 0 |
| Conread position: | 209-524 |
| Cow position: | chr23:24536054-24535733 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 249, 299 |
| Conread position: | 212-426 |
| Cow position: | chr23:25660145-25660359 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 37, 49 |
Show alignments to all cow chromosomes.