Cow genome map

Conread name: Ss1.1-Pig4-TMW8036I23.3

Conread position: 1-295
Cow position:
Alignm length: 296
Alignm identity: 206
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 92, 106

Conread position: 1-402
Cow position:
Alignm length: 402
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 0

Conread position: 1-406
Cow position:
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-427
Cow position:
Alignm length: 429
Alignm identity: 265
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 80, 104

Conread position: 1-452
Cow position:
Alignm length: 456
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 101

Conread position: 1-473
Cow position:
Alignm length: 476
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 156

Conread position: 1-489
Cow position:
Alignm length: 494
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 17

Conread position: 1-527
Cow position:
Alignm length: 535
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 448, 439

Conread position: 2-225
Cow position:
Alignm length: 224
Alignm identity: 152
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 2-246
Cow position:
Alignm length: 246
Alignm identity: 160
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 92, 45

Conread position: 2-425
Cow position:
Alignm length: 427
Alignm identity: 268
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 269, 250

Conread position: 2-454
Cow position:
Alignm length: 455
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 39

Conread position: 2-456
Cow position:
Alignm length: 456
Alignm identity: 280
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 251, 171

Conread position: 2-504
Cow position:
Alignm length: 509
Alignm identity: 303
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 79, 101

Conread position: 2-527
Cow position:
Alignm length: 533
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 347, 339

Conread position: 3-307
Cow position:
Alignm length: 305
Alignm identity: 202
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 141, 0

Conread position: 9-425
Cow position:
Alignm length: 419
Alignm identity: 255
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 83, 6

Conread position: 13-256
Cow position:
Alignm length: 244
Alignm identity: 157
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 13-309
Cow position:
Alignm length: 298
Alignm identity: 184
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 247, 235

Conread position: 13-423
Cow position:
Alignm length: 412
Alignm identity: 256
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 262, 101

Conread position: 13-426
Cow position:
Alignm length: 419
Alignm identity: 265
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 18, 13

Conread position: 13-426
Cow position:
Alignm length: 420
Alignm identity: 257
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 18, 13

Conread position: 13-426
Cow position:
Alignm length: 414
Alignm identity: 249
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 248, 0

Conread position: 13-446
Cow position:
Alignm length: 435
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 27

Conread position: 13-450
Cow position:
Alignm length: 441
Alignm identity: 265
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 100, 93

Conread position: 13-451
Cow position:
Alignm length: 441
Alignm identity: 259
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 240, 259

Conread position: 13-457
Cow position:
Alignm length: 448
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 33

Conread position: 13-515
Cow position:
Alignm length: 510
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 89

Conread position: 13-516
Cow position:
Alignm length: 509
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 445, 0

Conread position: 13-526
Cow position:
Alignm length: 521
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 89

Conread position: 14-229
Cow position:
Alignm length: 217
Alignm identity: 143
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 80, 95

Conread position: 14-313
Cow position:
Alignm length: 301
Alignm identity: 191
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 235, 264

Conread position: 14-425
Cow position:
Alignm length: 416
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 87

Conread position: 14-456
Cow position:
Alignm length: 449
Alignm identity: 283
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 59, 40

Conread position: 14-482
Cow position:
Alignm length: 471
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 441, 460

Conread position: 15-213
Cow position:
Alignm length: 199
Alignm identity: 135
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 15-237
Cow position:
Alignm length: 224
Alignm identity: 152
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 75, 85

Conread position: 15-338
Cow position:
Alignm length: 328
Alignm identity: 225
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 79, 97

Conread position: 15-419
Cow position:
Alignm length: 405
Alignm identity: 259
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 237, 0

Conread position: 15-423
Cow position:
Alignm length: 409
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-425
Cow position:
Alignm length: 412
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 88

Conread position: 15-425
Cow position:
Alignm length: 412
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 237

Conread position: 15-425
Cow position:
Alignm length: 417
Alignm identity: 265
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 159, 62

Conread position: 15-425
Cow position:
Alignm length: 411
Alignm identity: 260
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 15-426
Cow position:
Alignm length: 412
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 15-426
Cow position:
Alignm length: 412
Alignm identity: 242
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 245, 0

Conread position: 15-444
Cow position:
Alignm length: 432
Alignm identity: 284
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 159, 80

Conread position: 15-489
Cow position:
Alignm length: 486
Alignm identity: 320
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 95, 46

Conread position: 15-502
Cow position:
Alignm length: 498
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 32

Conread position: 15-502
Cow position:
Alignm length: 498
Alignm identity: 306
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 89, 26

Conread position: 15-504
Cow position:
Alignm length: 505
Alignm identity: 315
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 14, 10

Conread position: 16-295
Cow position:
Alignm length: 282
Alignm identity: 187
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 98, 90

Conread position: 17-305
Cow position:
Alignm length: 289
Alignm identity: 195
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 17-425
Cow position:
Alignm length: 412
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 87

Conread position: 17-497
Cow position:
Alignm length: 485
Alignm identity: 303
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 88, 7

Conread position: 19-307
Cow position:
Alignm length: 291
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 91

Conread position: 19-419
Cow position:
Alignm length: 403
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 81

Conread position: 19-419
Cow position:
Alignm length: 403
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 74

Conread position: 19-424
Cow position:
Alignm length: 406
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-425
Cow position:
Alignm length: 408
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 78

Conread position: 19-425
Cow position:
Alignm length: 409
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 83

Conread position: 19-453
Cow position:
Alignm length: 438
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 88

Conread position: 19-454
Cow position:
Alignm length: 438
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 81

Conread position: 19-454
Cow position:
Alignm length: 439
Alignm identity: 287
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 96, 91

Conread position: 19-493
Cow position:
Alignm length: 482
Alignm identity: 296
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 79, 74

Conread position: 19-496
Cow position:
Alignm length: 481
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 436, 0

Conread position: 19-682
Cow position:
Alignm length: 679
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 236

Conread position: 20-379
Cow position:
Alignm length: 360
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 20-452
Cow position:
Alignm length: 436
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 316, 113

Conread position: 21-425
Cow position:
Alignm length: 407
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 79

Conread position: 22-335
Cow position:
Alignm length: 315
Alignm identity: 201
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 227, 51

Conread position: 22-419
Cow position:
Alignm length: 401
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 80

Conread position: 22-425
Cow position:
Alignm length: 406
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 79

Conread position: 22-425
Cow position:
Alignm length: 408
Alignm identity: 272
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 218, 146

Conread position: 22-454
Cow position:
Alignm length: 435
Alignm identity: 262
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 54

Conread position: 24-474
Cow position:
Alignm length: 457
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 80

Conread position: 25-454
Cow position:
Alignm length: 432
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 22

Conread position: 26-370
Cow position:
Alignm length: 348
Alignm identity: 225
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 89, 84

Conread position: 26-456
Cow position:
Alignm length: 433
Alignm identity: 276
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 64, 74

Conread position: 26-516
Cow position:
Alignm length: 496
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 430, 0

Conread position: 27-379
Cow position:
Alignm length: 355
Alignm identity: 238
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 63, 73

Conread position: 27-424
Cow position:
Alignm length: 399
Alignm identity: 256
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 226, 238

Conread position: 27-425
Cow position:
Alignm length: 402
Alignm identity: 243
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 153, 149

Conread position: 27-504
Cow position:
Alignm length: 482
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 423, 447

Conread position: 28-425
Cow position:
Alignm length: 400
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 72

Conread position: 28-497
Cow position:
Alignm length: 476
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 72

Conread position: 29-334
Cow position:
Alignm length: 306
Alignm identity: 207
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 270, 0

Conread position: 29-454
Cow position:
Alignm length: 430
Alignm identity: 273
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 78, 67

Conread position: 29-516
Cow position:
Alignm length: 495
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 21

Conread position: 29-634
Cow position:
Alignm length: 615
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 505

Conread position: 30-291
Cow position:
Alignm length: 262
Alignm identity: 168
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 30-419
Cow position:
Alignm length: 394
Alignm identity: 258
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 60, 70

Conread position: 30-419
Cow position:
Alignm length: 392
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 79

Conread position: 30-425
Cow position:
Alignm length: 399
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 234

Conread position: 30-425
Cow position:
Alignm length: 397
Alignm identity: 247
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 64, 70

Conread position: 30-454
Cow position:
Alignm length: 427
Alignm identity: 262
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 328, 320

Conread position: 30-455
Cow position:
Alignm length: 429
Alignm identity: 265
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 60, 70

Conread position: 32-425
Cow position:
Alignm length: 394
Alignm identity: 237
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 33-380
Cow position:
Alignm length: 351
Alignm identity: 229
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 22, 29

Conread position: 34-250
Cow position:
Alignm length: 217
Alignm identity: 151
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 41-503
Cow position:
Alignm length: 470
Alignm identity: 305
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 59, 27

Conread position: 42-426
Cow position:
Alignm length: 386
Alignm identity: 229
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 211, 223

Conread position: 44-424
Cow position:
Alignm length: 383
Alignm identity: 241
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 306, 297

Conread position: 51-379
Cow position:
Alignm length: 330
Alignm identity: 211
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 200, 218

Conread position: 51-380
Cow position:
Alignm length: 333
Alignm identity: 226
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 186, 203

Conread position: 51-397
Cow position:
Alignm length: 350
Alignm identity: 234
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 186, 197

Conread position: 51-424
Cow position:
Alignm length: 375
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 221

Conread position: 51-428
Cow position:
Alignm length: 382
Alignm identity: 241
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 64, 49

Conread position: 51-454
Cow position:
Alignm length: 405
Alignm identity: 243
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 49

Conread position: 54-527
Cow position:
Alignm length: 482
Alignm identity: 300
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 40, 50

Conread position: 63-547
Cow position:
Alignm length: 489
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 49

Conread position: 72-425
Cow position:
Alignm length: 355
Alignm identity: 224
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 46, 53

Conread position: 72-497
Cow position:
Alignm length: 430
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 29

Conread position: 72-521
Cow position:
Alignm length: 459
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 169

Conread position: 75-393
Cow position:
Alignm length: 323
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 36

Conread position: 75-427
Cow position:
Alignm length: 356
Alignm identity: 224
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 164, 180

Conread position: 98-339
Cow position:
Alignm length: 242
Alignm identity: 169
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 99-444
Cow position:
Alignm length: 351
Alignm identity: 230
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 106, 101

Conread position: 99-515
Cow position:
Alignm length: 424
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 39

Conread position: 109-427
Cow position:
Alignm length: 320
Alignm identity: 200
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 140, 48

Conread position: 117-425
Cow position:
Alignm length: 311
Alignm identity: 203
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 151, 64

Conread position: 126-454
Cow position:
Alignm length: 330
Alignm identity: 214
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 223, 231

Conread position: 130-424
Cow position:
Alignm length: 296
Alignm identity: 197
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 117, 131

Conread position: 130-453
Cow position:
Alignm length: 324
Alignm identity: 206
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 132-426
Cow position:
Alignm length: 296
Alignm identity: 198
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 172, 166

Conread position: 134-426
Cow position:
Alignm length: 295
Alignm identity: 190
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 112, 138

Conread position: 135-398
Cow position:
Alignm length: 265
Alignm identity: 168
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 131, 113

Conread position: 135-451
Cow position:
Alignm length: 317
Alignm identity: 205
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 135-453
Cow position:
Alignm length: 321
Alignm identity: 203
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 115, 132

Conread position: 150-424
Cow position:
Alignm length: 276
Alignm identity: 178
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 229, 147

Conread position: 153-379
Cow position:
Alignm length: 227
Alignm identity: 153
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 95, 0

Conread position: 179-447
Cow position:
Alignm length: 269
Alignm identity: 187
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 182-402
Cow position:
Alignm length: 222
Alignm identity: 153
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 84, 72

Conread position: 190-454
Cow position:
Alignm length: 266
Alignm identity: 173
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 57, 74

Conread position: 212-464
Cow position:
Alignm length: 254
Alignm identity: 161
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 54, 48

Show alignments to all cow chromosomes.