Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I23.3 |
| Conread position: | 1-424 |
| Cow position: | chr28:9298935-9299342 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 279 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-454 |
| Cow position: | chr28:7810466-7810910 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 71 |
| Conread position: | 2-357 |
| Cow position: | chr28:34696199-34696553 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 2-426 |
| Cow position: | chr28:34695947-34696371 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 42, 23 |
| Conread position: | 2-426 |
| Cow position: | chr28:34696115-34696539 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 29 |
| Conread position: | 2-456 |
| Cow position: | chr28:11333850-11333402 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 289 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 247, 258 |
| Conread position: | 4-328 |
| Cow position: | chr28:9290372-9290695 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 90, 101 |
| Conread position: | 13-227 |
| Cow position: | chr28:33210442-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 119, 0 |
| Conread position: | 15-311 |
| Cow position: | chr28:33210360-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 15-392 |
| Cow position: | chr28:9253235-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-425 |
| Cow position: | chr28:7757548-7757958 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-474 |
| Cow position: | chr28:9298865-9299310 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 150, 124 |
| Conread position: | 15-516 |
| Cow position: | chr28:9253067-9253573 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 92 |
| Conread position: | 17-454 |
| Cow position: | chr28:7757887-7758323 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 7 |
| Conread position: | 19-297 |
| Cow position: | chr28:7758056-7758334 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-426 |
| Cow position: | chr28:7758461-7758867 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 266 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 230, 5 |
| Conread position: | 19-442 |
| Cow position: | chr28:9289969-9290390 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 154 |
| Conread position: | 19-474 |
| Cow position: | chr28:7757384-7757841 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 81 |
| Conread position: | 19-497 |
| Cow position: | chr28:7757720-7758202 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 76 |
| Conread position: | 19-516 |
| Cow position: | chr28:7757468-7757970 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 20-490 |
| Cow position: | chr28:11333664-11333191 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 341, 198 |
| Conread position: | 21-456 |
| Cow position: | chr28:9298371-9298803 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 172, 131 |
| Conread position: | 21-457 |
| Cow position: | chr28:9299275-9299708 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 285 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 72, 84 |
| Conread position: | 22-379 |
| Cow position: | chr28:7757975-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 22-424 |
| Cow position: | chr28:7757639-7758041 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 78 |
| Conread position: | 22-425 |
| Cow position: | chr28:7810403-7810797 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 22-454 |
| Cow position: | chr28:9298705-9299134 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 77 |
| Conread position: | 22-497 |
| Cow position: | chr28:9252990-9253470 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 78 |
| Conread position: | 24-402 |
| Cow position: | chr28:7810564-7810942 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-426 |
| Cow position: | chr28:9290227-9290625 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 32 |
| Conread position: | 25-426 |
| Cow position: | chr28:34679584-34679182 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 271 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 88, 38 |
| Conread position: | 28-454 |
| Cow position: | chr28:9252746-9253170 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 86, 56 |
| Conread position: | 28-454 |
| Cow position: | chr28:11333992-11333566 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-358 |
| Cow position: | chr28:33210290-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 237, 219 |
| Conread position: | 29-403 |
| Cow position: | chr28:9290314-9290686 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 29-425 |
| Cow position: | chr28:34673417-34673813 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 220, 242 |
| Conread position: | 29-452 |
| Cow position: | chr28:7757814-7758237 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 29-473 |
| Cow position: | chr28:7810326-7810763 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 68 |
| Conread position: | 29-493 |
| Cow position: | chr28:9252912-9253380 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 29-511 |
| Cow position: | chr28:9299045-9299518 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 318 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 293, 141 |
| Conread position: | 30-235 |
| Cow position: | chr28:34696395-34696598 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 84, 75 |
| Conread position: | 30-247 |
| Cow position: | chr28:9290481-9290698 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-349 |
| Cow position: | chr28:34673586-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-381 |
| Cow position: | chr28:34679413-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 30-413 |
| Cow position: | chr28:11333906-11333523 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-418 |
| Cow position: | chr28:7758387-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 30-426 |
| Cow position: | chr28:34696059-34696455 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 262 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 73, 82 |
| Conread position: | 30-443 |
| Cow position: | chr28:34695891-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 95, 71 |
| Conread position: | 30-454 |
| Cow position: | chr28:9253166-9253590 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 64 |
| Conread position: | 30-477 |
| Cow position: | chr28:11334242-11333793 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 284 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 77, 72 |
| Conread position: | 30-497 |
| Cow position: | chr28:9252832-9253301 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 31-418 |
| Cow position: | chr28:11334073-11333686 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 218, 225 |
| Conread position: | 32-327 |
| Cow position: | chr28:7810656-7810950 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 206 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 75, 52 |
| Conread position: | 34-488 |
| Cow position: | chr28:11334154-11333697 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 278 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 422, 0 |
| Conread position: | 40-426 |
| Cow position: | chr28:9298556-9298940 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 249 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 45, 62 |
| Conread position: | 47-393 |
| Cow position: | chr28:9299217-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 233 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 43, 59 |
| Conread position: | 50-451 |
| Cow position: | chr28:33210227-33210629 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 51-454 |
| Cow position: | chr28:7758324-7758727 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 53-454 |
| Cow position: | chr28:7757334-7757735 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 64-426 |
| Cow position: | chr28:34695841-34696203 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 229 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 114-402 |
| Cow position: | chr28:7810252-7810531 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 208, 40 |
| Conread position: | 135-454 |
| Cow position: | chr28:33210228-33210547 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 112, 121 |
| Conread position: | 142-400 |
| Cow position: | chr28:34673362-34673620 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 105, 130 |
| Conread position: | 197-454 |
| Cow position: | chr28:7810251-7810499 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 71, 41 |
Show alignments to all cow chromosomes.