Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I23.3 |
| Conread position: | 1-297 |
| Cow position: | chr3:68046055-68046351 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 206 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 91, 103 |
| Conread position: | 1-418 |
| Cow position: | chr3:68027126-68027543 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 96 |
| Conread position: | 1-454 |
| Cow position: | chr3:62722039-62721586 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 101 |
| Conread position: | 1-454 |
| Cow position: | chr3:62722291-62721838 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 434, 414 |
| Conread position: | 1-474 |
| Cow position: | chr3:62742811-62743265 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 186 |
| Conread position: | 1-497 |
| Cow position: | chr3:68045803-68046303 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 17 |
| Conread position: | 3-224 |
| Cow position: | chr3:62721785-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 157 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-497 |
| Cow position: | chr3:62742898-62743374 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 452, 88 |
| Conread position: | 3-515 |
| Cow position: | chr3:62722205-62721688 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 453, 0 |
| Conread position: | 6-544 |
| Cow position: | chr3:62742401-62742933 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 451, 240 |
| Conread position: | 17-392 |
| Cow position: | chr3:62721940-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 86 |
| Conread position: | 18-335 |
| Cow position: | chr3:62743143-62743460 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-427 |
| Cow position: | chr3:68027396-68027798 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 237 |
| Conread position: | 19-505 |
| Cow position: | chr3:68045653-68046144 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 254 |
| Conread position: | 19-583 |
| Cow position: | chr3:62722357-62721790 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 20-477 |
| Cow position: | chr3:77351271-77350820 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 287 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 32, 83 |
| Conread position: | 26-418 |
| Cow position: | chr3:62743072-62743459 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 260 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 221, 44 |
| Conread position: | 28-256 |
| Cow position: | chr3:16020402-16020177 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 87, 83 |
| Conread position: | 29-291 |
| Cow position: | chr3:77350850-77350591 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 78, 73 |
| Conread position: | 29-388 |
| Cow position: | chr3:68045999-68046356 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 344, 0 |
| Conread position: | 30-375 |
| Cow position: | chr3:77350933-77350591 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 229 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 30-445 |
| Cow position: | chr3:20194785-20195200 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 247 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 328, 304 |
| Conread position: | 30-451 |
| Cow position: | chr3:68027323-68027744 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-454 |
| Cow position: | chr3:68045916-68046340 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 63 |
| Conread position: | 30-454 |
| Cow position: | chr3:77351011-77350596 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 32, 42 |
| Conread position: | 30-472 |
| Cow position: | chr3:20194869-20195311 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 30-493 |
| Cow position: | chr3:68045580-68046046 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 308 |
| Conread position: | 32-493 |
| Cow position: | chr3:68026990-68027453 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 11 |
| Conread position: | 34-516 |
| Cow position: | chr3:62742346-62742827 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 318, 8 |
| Conread position: | 35-505 |
| Cow position: | chr3:68027076-68027551 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 421, 0 |
| Conread position: | 124-384 |
| Cow position: | chr3:16020467-16020214 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 237, 52 |
| Conread position: | 183-706 |
| Cow position: | chr3:68045565-68046097 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 273, 360 |
Show alignments to all cow chromosomes.