Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I23.3 |
| Conread position: | 1-424 |
| Cow position: | chr6:49340438-49340861 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 1-454 |
| Cow position: | chr6:49340942-49341395 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 2-373 |
| Cow position: | chr6:49361966-49362336 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 23 |
| Conread position: | 2-398 |
| Cow position: | chr6:49396580-49396976 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 254 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 16, 28 |
| Conread position: | 2-426 |
| Cow position: | chr6:49396412-49396836 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 2-426 |
| Cow position: | chr6:49428599-49429023 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 9-427 |
| Cow position: | chr6:49428523-49428940 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 96, 21 |
| Conread position: | 13-426 |
| Cow position: | chr6:49428274-49428687 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 13-426 |
| Cow position: | chr6:49428862-49429275 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 263 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 72, 99 |
| Conread position: | 14-426 |
| Cow position: | chr6:49428779-49429191 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 251 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 331, 300 |
| Conread position: | 18-426 |
| Cow position: | chr6:49340708-49341115 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 21-254 |
| Cow position: | chr6:49362634-49362866 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 24-238 |
| Cow position: | chr6:49341217-49341431 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 69, 79 |
| Conread position: | 29-322 |
| Cow position: | chr6:49341138-49341431 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-373 |
| Cow position: | chr6:49429130-49429474 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 223 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 30-262 |
| Cow position: | chr6:49396776-49397008 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-307 |
| Cow position: | chr6:49429215-49429492 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 174 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-402 |
| Cow position: | chr6:49341055-49341427 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-402 |
| Cow position: | chr6:49396272-49396644 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-426 |
| Cow position: | chr6:49396026-49396416 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 30-454 |
| Cow position: | chr6:49396194-49396612 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 271 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 30-481 |
| Cow position: | chr6:49340635-49341087 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 85 |
| Conread position: | 30-497 |
| Cow position: | chr6:49340803-49341275 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 0 |
| Conread position: | 30-502 |
| Cow position: | chr6:49396524-49397001 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 303 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 30-515 |
| Cow position: | chr6:49340551-49341041 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 230 |
| Conread position: | 30-518 |
| Cow position: | chr6:49396356-49396849 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 306 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 30-524 |
| Cow position: | chr6:49340887-49341387 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 85 |
| Conread position: | 35-524 |
| Cow position: | chr6:49340388-49340883 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 80 |
| Conread position: | 36-514 |
| Cow position: | chr6:49340149-49340620 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 79, 63 |
| Conread position: | 39-443 |
| Cow position: | chr6:49428384-49428787 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 249 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 214, 243 |
| Conread position: | 39-519 |
| Cow position: | chr6:49395783-49396262 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 82, 73 |
| Conread position: | 42-443 |
| Cow position: | chr6:49362330-49362719 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 234, 240 |
| Conread position: | 53-426 |
| Cow position: | chr6:49428230-49428603 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 106-650 |
| Cow position: | chr6:49340375-49340923 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 426 |
| Conread position: | 177-424 |
| Cow position: | chr6:49340362-49340609 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.