Cow genome map

Conread name: Ss1.1-Pig4-TMW8036I23.3

Conread position: 1-387
Cow position: chr7:11600817-11600430 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 176

Conread position: 1-426
Cow position: chr7:1014973-1015398 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-426
Cow position: chr7:8277798-8278223 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 282
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 21, 29

Conread position: 1-495
Cow position: chr7:3180319-3180814 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 17

Conread position: 1-497
Cow position: chr7:42879158-42878657 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 23

Conread position: 1-503
Cow position: chr7:3179899-3180406 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 10

Conread position: 1-503
Cow position: chr7:8243504-8244009 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 108

Conread position: 1-516
Cow position: chr7:11601069-11600549 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 445, 0

Conread position: 1-527
Cow position: chr7:3180067-3180599 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 14

Conread position: 13-514
Cow position: chr7:18390292-18390798 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 83

Conread position: 15-481
Cow position: chr7:11601139-11600672 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 326

Conread position: 15-503
Cow position: chr7:42878808-42878315 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 440, 0

Conread position: 17-516
Cow position: chr7:1014653-1015157 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 323, 340

Conread position: 18-426
Cow position: chr7:11600884-11600476 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 19-173
Cow position: chr7:1440110-1440264 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 88, 67

Conread position: 19-233
Cow position: chr7:42878468-42878251 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 75, 96

Conread position: 19-276
Cow position: chr7:1438469-1438726 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 171
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 19-425
Cow position: chr7:18390046-18390452 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 246

Conread position: 19-493
Cow position: chr7:1014908-1015384 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 438, 7

Conread position: 19-504
Cow position: chr7:1439522-1440012 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 65

Conread position: 21-429
Cow position: chr7:8324956-8325363 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 9

Conread position: 22-359
Cow position: chr7:1438388-1438724 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 224
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 60, 82

Conread position: 22-427
Cow position: chr7:1015078-1015485 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 0

Conread position: 22-474
Cow position: chr7:42879221-42878767 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 87

Conread position: 22-475
Cow position: chr7:42878717-42878262 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 434, 0

Conread position: 22-503
Cow position: chr7:42878969-42878483 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 87

Conread position: 22-516
Cow position: chr7:1438138-1438635 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 299
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 432, 51

Conread position: 22-516
Cow position: chr7:11601216-11600717 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 155

Conread position: 24-516
Cow position: chr7:3179838-3180335 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 71

Conread position: 27-442
Cow position: chr7:28846567-28846982 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 255
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 95, 77

Conread position: 28-339
Cow position: chr7:11434587-11434283 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 207
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 88, 49

Conread position: 28-504
Cow position: chr7:8325214-8325695 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 234

Conread position: 28-516
Cow position: chr7:3180178-3180671 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 227

Conread position: 29-178
Cow position: chr7:11434425-11434276 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 29-256
Cow position: chr7:1440036-1440264 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 218, 0

Conread position: 29-299
Cow position: chr7:8325887-8326160 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 199
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 170, 150

Conread position: 29-339
Cow position: chr7:8325803-8326113 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 158

Conread position: 29-424
Cow position: chr7:1438311-1438706 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 253
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 134, 148

Conread position: 29-424
Cow position: chr7:1439869-1440263 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 103

Conread position: 29-424
Cow position: chr7:8325635-8326030 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 80

Conread position: 29-425
Cow position: chr7:1439448-1439846 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 262
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 62, 71

Conread position: 29-425
Cow position: chr7:8277658-8278054 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 68

Conread position: 29-425
Cow position: chr7:8277910-8278306 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 57

Conread position: 29-426
Cow position: chr7:8243029-8243425 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 253
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 83, 87

Conread position: 29-429
Cow position: chr7:8242861-8243261 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 261
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 87, 69

Conread position: 29-429
Cow position: chr7:8325383-8325783 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 61

Conread position: 29-452
Cow position: chr7:8243700-8244118 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 280
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 312, 299

Conread position: 29-455
Cow position: chr7:18390140-18390566 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 298

Conread position: 29-473
Cow position: chr7:1014335-1014775 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 286
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 78, 73

Conread position: 29-493
Cow position: chr7:8277574-8278041 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 307
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 86, 70

Conread position: 29-496
Cow position: chr7:8277406-8277876 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 309
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 73, 63

Conread position: 29-497
Cow position: chr7:42878878-42878406 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 71

Conread position: 29-497
Cow position: chr7:42879046-42878574 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 71

Conread position: 29-503
Cow position: chr7:8278246-8278716 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 300
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 170, 157

Conread position: 29-508
Cow position: chr7:8324795-8325279 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 70

Conread position: 29-508
Cow position: chr7:8325299-8325783 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 149

Conread position: 29-515
Cow position: chr7:3180263-3180754 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 72

Conread position: 29-516
Cow position: chr7:3179759-3180251 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 427, 0

Conread position: 29-521
Cow position: chr7:8243448-8243945 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 318
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 86, 80

Conread position: 29-524
Cow position: chr7:1014833-1015334 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 78

Conread position: 30-315
Cow position: chr7:11434508-11434223 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 190
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 249, 225

Conread position: 30-426
Cow position: chr7:18390225-18390621 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-429
Cow position: chr7:11434753-11434361 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 265
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 86, 68

Conread position: 30-431
Cow position: chr7:8242946-8243347 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 258
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 225, 251

Conread position: 30-477
Cow position: chr7:1014750-1015199 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 64

Conread position: 30-481
Cow position: chr7:11600956-11600504 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 319, 311

Conread position: 30-494
Cow position: chr7:8277323-8277785 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 306
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 79, 85

Conread position: 30-679
Cow position: chr7:3180012-3180670 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 68

Conread position: 31-426
Cow position: chr7:11434668-11434280 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 258
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 84, 67

Conread position: 31-473
Cow position: chr7:42879296-42878852 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 230

Conread position: 34-362
Cow position: chr7:18390481-18390809 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 221
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 73, 60

Conread position: 35-426
Cow position: chr7:1014257-1014648 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 247
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 314, 306

Conread position: 35-517
Cow position: chr7:8325473-8325960 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 74

Conread position: 37-424
Cow position: chr7:8278170-8278555 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 250
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 71, 78

Conread position: 42-429
Cow position: chr7:8325732-8326119 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 55

Conread position: 43-500
Cow position: chr7:11434824-11434377 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 281
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 157, 134

Conread position: 44-429
Cow position: chr7:8243379-8243764 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 228

Conread position: 52-454
Cow position: chr7:18389995-18390397 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 259
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 132, 139

Conread position: 53-508
Cow position: chr7:8324735-8325195 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 44

Conread position: 57-426
Cow position: chr7:8242805-8243174 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 241
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 58, 42

Conread position: 79-424
Cow position: chr7:1439410-1439762 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 240
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 15, 185

Conread position: 87-506
Cow position: chr7:18389945-18390370 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 254
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 96-424
Cow position: chr7:1014233-1014562 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 220
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 20, 274

Conread position: 105-493
Cow position: chr7:1014159-1014550 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 247
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 159, 150

Conread position: 106-474
Cow position: chr7:42879305-42878935 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 350, 0

Conread position: 114-521
Cow position: chr7:1438312-1438724 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 259
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 133, 146

Conread position: 129-497
Cow position: chr7:42879368-42878994 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 240
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 20, 0

Conread position: 132-429
Cow position: chr7:8277257-8277554 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 200
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 63, 43

Conread position: 140-496
Cow position: chr7:8242804-8243163 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 241
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 68, 37

Conread position: 150-527
Cow position: chr7:3179712-3180095 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 254
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 306, 0

Show alignments to all cow chromosomes.