Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036I23.3 |
| Conread position: | 1-503 |
| Cow position: | chrX:25309840-25310347 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 106 |
| Conread position: | 2-319 |
| Cow position: | chrX:14181271-14180954 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 308, 301 |
| Conread position: | 2-721 |
| Cow position: | chrX:25325048-25324321 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 204 |
| Conread position: | 10-426 |
| Cow position: | chrX:13826737-13826321 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 263 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 183, 176 |
| Conread position: | 13-246 |
| Cow position: | chrX:14181176-14180943 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 12 |
| Conread position: | 14-497 |
| Cow position: | chrX:25325372-25324885 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 88 |
| Conread position: | 15-474 |
| Cow position: | chrX:25325203-25324742 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 96 |
| Conread position: | 15-493 |
| Cow position: | chrX:25309770-25310251 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 246 |
| Conread position: | 15-653 |
| Cow position: | chrX:25325539-25324897 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 90 |
| Conread position: | 17-237 |
| Cow position: | chrX:29044875-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 6, 78 |
| Conread position: | 18-425 |
| Cow position: | chrX:14181422-14181016 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 231, 12 |
| Conread position: | 19-520 |
| Cow position: | chrX:25324695-25324193 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 95 |
| Conread position: | 24-454 |
| Cow position: | chrX:25310115-25310545 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 165 |
| Conread position: | 28-452 |
| Cow position: | chrX:25309699-25310123 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-244 |
| Cow position: | chrX:25310372-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 61, 75 |
| Conread position: | 29-251 |
| Cow position: | chrX:29045597-29045375 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 86, 63 |
| Conread position: | 29-321 |
| Cow position: | chrX:29044946-29044654 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 73 |
| Conread position: | 29-330 |
| Cow position: | chrX:29045681-29045380 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 65, 71 |
| Conread position: | 29-402 |
| Cow position: | chrX:25310204-25310577 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 64 |
| Conread position: | 29-403 |
| Cow position: | chrX:29045030-29044656 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 80 |
| Conread position: | 29-424 |
| Cow position: | chrX:12627667-12628062 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 252 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 89, 70 |
| Conread position: | 29-481 |
| Cow position: | chrX:25325609-25325156 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 232 |
| Conread position: | 29-503 |
| Cow position: | chrX:29045282-29044803 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 81 |
| Conread position: | 30-328 |
| Cow position: | chrX:25310289-25310586 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 30-415 |
| Cow position: | chrX:14181327-14180942 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 243 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 169, 156 |
| Conread position: | 30-425 |
| Cow position: | chrX:13826633-13826238 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 245 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 321, 326 |
| Conread position: | 30-425 |
| Cow position: | chrX:13826801-13826406 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 155, 160 |
| Conread position: | 30-476 |
| Cow position: | chrX:29045113-29044665 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 70 |
| Conread position: | 30-491 |
| Cow position: | chrX:25310037-25310496 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 30-496 |
| Cow position: | chrX:29045197-29044728 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 80 |
| Conread position: | 30-502 |
| Cow position: | chrX:25325104-25324626 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 0 |
| Conread position: | 30-503 |
| Cow position: | chrX:25325776-25325298 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 81 |
| Conread position: | 30-505 |
| Cow position: | chrX:25325272-25324792 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 426, 0 |
| Conread position: | 31-258 |
| Cow position: | chrX:12627837-12628064 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 72, 62 |
| Conread position: | 31-470 |
| Cow position: | chrX:29045361-29044923 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 37-339 |
| Cow position: | chrX:12627759-12628061 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 68, 76 |
| Conread position: | 41-339 |
| Cow position: | chrX:12627429-12627725 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 192 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 41-457 |
| Cow position: | chrX:29045837-29045421 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 59 |
| Conread position: | 50-413 |
| Cow position: | chrX:12627270-12627632 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 68, 47 |
| Conread position: | 75-426 |
| Cow position: | chrX:13826924-13826573 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 107, 115 |
| Conread position: | 97-527 |
| Cow position: | chrX:25325877-25325442 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 39 |
| Conread position: | 204-454 |
| Cow position: | chrX:25309707-25309957 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.