Cow genome map

Conread name: Ss1.1-Pig4-TMW8036O21.3

Conread position: 1-129
Cow position: chr25:33100785-33100656 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 2-129
Cow position: chr25:24669240-24669368 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 100
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 62, 0

Conread position: 2-377
Cow position: chr25:31732121-31732485 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 249
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 62, 85

Conread position: 3-397
Cow position: chr25:16921583-16921958 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 266
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 61, 18

Conread position: 4-397
Cow position: chr25:6473866-6474257 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 265
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 60, 88

Conread position: 5-347
Cow position: chr25:30619288-30618946 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 232
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 41, 30

Conread position: 6-109
Cow position: chr25:33663701-33663804 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 86
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 58, 87

Conread position: 6-128
Cow position: chr25:26087726-26087603 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 55, 0

Conread position: 8-118
Cow position: chr25:28945222-28945112 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 41

Conread position: 8-397
Cow position: chr25:18906123-18905723 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 164

Conread position: 9-397
Cow position: chr25:1838448-1838075 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 134

Conread position: 9-409
Cow position: chr25:22296810-22297191 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 272
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 55, 13

Conread position: 10-350
Cow position: chr25:18201725-18202046 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 241
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 54, 41

Conread position: 11-118
Cow position: chr25:6940289-6940396 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 90
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 53, 9

Conread position: 11-412
Cow position: chr25:11585731-11585339 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 271
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 53, 10

Conread position: 12-103
Cow position: chr25:33550714-33550621 (view UCSC Genome Browser custom track)
Alignm length: 94
Alignm identity: 81
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 15-397
Cow position: chr25:18894512-18894881 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 249
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 49, 66

Conread position: 29-335
Cow position: chr25:13384671-13384348 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 214
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 202

Conread position: 29-355
Cow position: chr25:36535233-36535562 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 228
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 26

Conread position: 207-394
Cow position: chr25:20211056-20211243 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 46, 68

Conread position: 214-349
Cow position: chr25:13640398-13640264 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 105
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 214-350
Cow position: chr25:24651436-24651571 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 102
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 45, 0

Conread position: 214-352
Cow position: chr25:27801299-27801164 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 112
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 46, 0

Conread position: 214-352
Cow position: chr25:30816906-30816763 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 54, 45

Conread position: 214-377
Cow position: chr25:9957021-9957181 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 133

Conread position: 214-377
Cow position: chr25:12997612-12997451 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 126
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 55, 133

Conread position: 214-393
Cow position: chr25:12081303-12081481 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 144
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 45, 132

Conread position: 214-393
Cow position: chr25:12840701-12840891 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 151
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 32, 0

Conread position: 214-393
Cow position: chr25:18487685-18487503 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 130
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 63, 38

Conread position: 214-396
Cow position: chr25:18988407-18988219 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 58, 45

Conread position: 214-396
Cow position: chr25:25827488-25827305 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 44, 114

Conread position: 214-396
Cow position: chr25:26654929-26654750 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 13, 134

Conread position: 214-397
Cow position: chr25:61667-61495 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 172, 42

Conread position: 214-397
Cow position: chr25:1735303-1735474 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 172, 47

Conread position: 214-397
Cow position: chr25:6464012-6464195 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 56, 134

Conread position: 214-397
Cow position: chr25:6891518-6891687 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 172, 33

Conread position: 214-397
Cow position: chr25:11131601-11131419 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 34, 74

Conread position: 214-397
Cow position: chr25:13672412-13672230 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 58, 133

Conread position: 214-397
Cow position: chr25:15377344-15377166 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 42, 93

Conread position: 214-397
Cow position: chr25:15440769-15440942 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 137
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 88, 32

Conread position: 214-397
Cow position: chr25:17342475-17342291 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 51, 134

Conread position: 214-397
Cow position: chr25:20133297-20133474 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 42, 57

Conread position: 214-397
Cow position: chr25:20785569-20785746 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 135
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 45, 131

Conread position: 214-397
Cow position: chr25:21894867-21895048 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 44, 131

Conread position: 214-397
Cow position: chr25:23779313-23779486 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 7, 42

Conread position: 214-397
Cow position: chr25:31705020-31704831 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 34, 0

Conread position: 214-398
Cow position: chr25:20008149-20007972 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 169, 73

Conread position: 214-400
Cow position: chr25:14791774-14791589 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 147
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 45, 135

Conread position: 214-402
Cow position: chr25:17658628-17658446 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 45, 110

Conread position: 214-410
Cow position: chr25:17566604-17566410 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 61, 131

Conread position: 214-410
Cow position: chr25:21893355-21893162 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 151
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 44, 134

Conread position: 214-412
Cow position: chr25:10218032-10218229 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 54, 45

Conread position: 214-412
Cow position: chr25:15319937-15319741 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 145
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 49, 89

Conread position: 214-413
Cow position: chr25:16064909-16064716 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 45, 134

Conread position: 214-419
Cow position: chr25:6121752-6121949 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 152
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 172, 46

Conread position: 214-437
Cow position: chr25:22332780-22332562 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 160
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 130, 0

Conread position: 215-355
Cow position: chr25:24504483-24504623 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 33, 90

Conread position: 215-362
Cow position: chr25:9880645-9880495 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 111
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 44, 0

Conread position: 215-393
Cow position: chr25:16714253-16714432 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 42, 30

Conread position: 215-397
Cow position: chr25:6996802-6996620 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 43, 132

Conread position: 215-399
Cow position: chr25:28187929-28188111 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 44, 37

Conread position: 215-413
Cow position: chr25:13443395-13443594 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 144
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 44, 37

Conread position: 216-352
Cow position: chr25:19317281-19317138 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 32, 0

Conread position: 216-376
Cow position: chr25:5920959-5920798 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 121
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 49, 133

Conread position: 216-393
Cow position: chr25:38425376-38425201 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 49, 157

Conread position: 216-397
Cow position: chr25:12755472-12755654 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 141
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 41, 133

Conread position: 216-407
Cow position: chr25:6943095-6943292 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 0

Conread position: 217-336
Cow position: chr25:21926542-21926664 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 39, 105

Conread position: 217-395
Cow position: chr25:12824003-12824178 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 43, 131

Conread position: 217-396
Cow position: chr25:5515028-5514849 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 42, 132

Conread position: 217-397
Cow position: chr25:4002816-4002638 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 42, 128

Conread position: 217-397
Cow position: chr25:7581417-7581586 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 169, 35

Conread position: 217-397
Cow position: chr25:9961159-9961335 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 140
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 169, 44

Conread position: 217-397
Cow position: chr25:23323214-23323044 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 217-397
Cow position: chr25:26087533-26087357 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 40, 65

Conread position: 217-397
Cow position: chr25:35625170-35625338 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 42, 79

Conread position: 219-392
Cow position: chr25:36027013-36026851 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 129
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 166, 27

Conread position: 219-399
Cow position: chr25:13642300-13642479 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 40, 126

Conread position: 219-402
Cow position: chr25:16001513-16001691 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 44, 124

Conread position: 220-397
Cow position: chr25:21245593-21245769 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 47, 120

Conread position: 220-397
Cow position: chr25:36033449-36033272 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 127
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 35, 149

Conread position: 220-397
Cow position: chr25:36762116-36761944 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 34, 85

Conread position: 220-400
Cow position: chr25:36779512-36779331 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 39, 130

Conread position: 221-393
Cow position: chr25:13569162-13569331 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 136
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 42, 34

Conread position: 222-353
Cow position: chr25:17119753-17119621 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 106
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 15, 67

Conread position: 222-400
Cow position: chr25:11315913-11315745 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 164, 73

Conread position: 223-395
Cow position: chr25:788272-788105 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 25, 94

Conread position: 223-412
Cow position: chr25:36081885-36081694 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 140
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 39, 154

Conread position: 227-393
Cow position: chr25:35333163-35333000 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 132
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 119

Conread position: 227-397
Cow position: chr25:14945446-14945614 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 127
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 130

Conread position: 227-397
Cow position: chr25:26679230-26679066 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 125
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 157, 117

Conread position: 227-407
Cow position: chr25:31732730-31732910 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 148

Conread position: 247-397
Cow position: chr25:10365772-10365913 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 139, 14

Conread position: 264-397
Cow position: chr25:12204435-12204308 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 80, 0

Conread position: 267-412
Cow position: chr25:8347471-8347330 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 77, 0

Conread position: 271-395
Cow position: chr25:6255978-6256099 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 101
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 115, 71

Conread position: 278-397
Cow position: chr25:17712488-17712372 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 96
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 64, 0

Show alignments to all cow chromosomes.