Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8036O21.3 |
| Conread position: | 1-125 |
| Cow position: | chr26:28603-28727 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 14 |
| Conread position: | 1-128 |
| Cow position: | chr26:27482332-27482465 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 3-135 |
| Cow position: | chr26:4854772-4854637 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 61, 17 |
| Conread position: | 4-122 |
| Cow position: | chr26:18401087-18401206 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 4-128 |
| Cow position: | chr26:21822819-21822944 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 4-391 |
| Cow position: | chr26:586644-587017 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 60, 95 |
| Conread position: | 6-389 |
| Cow position: | chr26:29333314-29332956 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 42 |
| Conread position: | 9-127 |
| Cow position: | chr26:9099310-9099430 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 9-128 |
| Cow position: | chr26:1894158-1894279 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 10-395 |
| Cow position: | chr26:35449278-35448920 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 54, 37 |
| Conread position: | 10-408 |
| Cow position: | chr26:12964459-12964849 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 54, 97 |
| Conread position: | 11-400 |
| Cow position: | chr26:13020898-13021291 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 53, 9 |
| Conread position: | 12-372 |
| Cow position: | chr26:13818668-13818297 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 75, 37 |
| Conread position: | 12-412 |
| Cow position: | chr26:16550208-16549820 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 256, 46 |
| Conread position: | 15-399 |
| Cow position: | chr26:34060553-34060189 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 49, 72 |
| Conread position: | 15-400 |
| Cow position: | chr26:4584994-4585354 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 49, 80 |
| Conread position: | 20-397 |
| Cow position: | chr26:4167137-4167499 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 44, 69 |
| Conread position: | 21-413 |
| Cow position: | chr26:19774063-19774465 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 43, 91 |
| Conread position: | 24-397 |
| Cow position: | chr26:17057883-17057543 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 40, 62 |
| Conread position: | 85-397 |
| Cow position: | chr26:11263807-11263498 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 158-395 |
| Cow position: | chr26:20013566-20013337 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 107, 13 |
| Conread position: | 196-397 |
| Cow position: | chr26:6447541-6447746 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 168 |
| Conread position: | 207-413 |
| Cow position: | chr26:613632-613833 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 50, 142 |
| Conread position: | 210-397 |
| Cow position: | chr26:25737511-25737328 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 57, 40 |
| Conread position: | 212-412 |
| Cow position: | chr26:3181901-3182109 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 214-349 |
| Cow position: | chr26:10767876-10768012 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 214-349 |
| Cow position: | chr26:12893391-12893522 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 214-350 |
| Cow position: | chr26:32834541-32834675 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 214-353 |
| Cow position: | chr26:8700011-8700152 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 105 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 214-393 |
| Cow position: | chr26:9604598-9604416 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 51, 133 |
| Conread position: | 214-393 |
| Cow position: | chr26:30254597-30254777 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 130, 56 |
| Conread position: | 214-394 |
| Cow position: | chr26:6475391-6475578 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 214-394 |
| Cow position: | chr26:31779518-31779338 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 50, 107 |
| Conread position: | 214-395 |
| Cow position: | chr26:15200477-15200659 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 23, 92 |
| Conread position: | 214-395 |
| Cow position: | chr26:21243138-21242962 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 44, 132 |
| Conread position: | 214-395 |
| Cow position: | chr26:32013669-32013486 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 137 |
| Conread position: | 214-397 |
| Cow position: | chr26:2531146-2531324 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 172, 130 |
| Conread position: | 214-397 |
| Cow position: | chr26:12155085-12155264 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 66, 38 |
| Conread position: | 214-397 |
| Cow position: | chr26:21992138-21991954 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 45, 161 |
| Conread position: | 214-397 |
| Cow position: | chr26:22348976-22349155 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 138 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 35, 74 |
| Conread position: | 214-397 |
| Cow position: | chr26:31903203-31903021 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 45, 133 |
| Conread position: | 214-397 |
| Cow position: | chr26:33567008-33567188 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 214-400 |
| Cow position: | chr26:6794181-6793998 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 172, 71 |
| Conread position: | 214-400 |
| Cow position: | chr26:22152263-22152080 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 44, 74 |
| Conread position: | 214-400 |
| Cow position: | chr26:25394069-25393885 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 53, 134 |
| Conread position: | 214-401 |
| Cow position: | chr26:8642984-8642799 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 34, 131 |
| Conread position: | 214-410 |
| Cow position: | chr26:8811163-8810977 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 214-412 |
| Cow position: | chr26:22354449-22354253 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 60, 131 |
| Conread position: | 214-417 |
| Cow position: | chr26:32776470-32776673 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 44, 131 |
| Conread position: | 215-397 |
| Cow position: | chr26:32672402-32672581 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 50, 122 |
| Conread position: | 216-349 |
| Cow position: | chr26:18692455-18692323 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 103 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 29, 37 |
| Conread position: | 216-356 |
| Cow position: | chr26:4807592-4807454 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 217-349 |
| Cow position: | chr26:34314724-34314589 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 40, 62 |
| Conread position: | 217-350 |
| Cow position: | chr26:33253283-33253421 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 217-397 |
| Cow position: | chr26:6724138-6723959 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 124, 43 |
| Conread position: | 217-397 |
| Cow position: | chr26:14957986-14958158 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 169, 43 |
| Conread position: | 220-348 |
| Cow position: | chr26:7315077-7315201 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 220-397 |
| Cow position: | chr26:9850067-9850244 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 220-397 |
| Cow position: | chr26:9853577-9853754 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 42, 80 |
| Conread position: | 220-397 |
| Cow position: | chr26:31890122-31889950 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 166, 119 |
| Conread position: | 220-400 |
| Cow position: | chr26:22249447-22249624 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 45, 127 |
| Conread position: | 221-407 |
| Cow position: | chr26:34108788-34108609 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 72 |
| Conread position: | 222-333 |
| Cow position: | chr26:32120662-32120556 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 92 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 222-397 |
| Cow position: | chr26:28243595-28243766 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 163, 54 |
| Conread position: | 223-397 |
| Cow position: | chr26:6252884-6252708 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 11, 128 |
| Conread position: | 224-405 |
| Cow position: | chr26:8819832-8820014 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 32, 126 |
| Conread position: | 226-397 |
| Cow position: | chr26:20846647-20846484 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 159, 77 |
| Conread position: | 227-400 |
| Cow position: | chr26:9082206-9082377 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 118, 42 |
| Conread position: | 228-377 |
| Cow position: | chr26:5246456-5246604 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 31, 117 |
| Conread position: | 228-397 |
| Cow position: | chr26:23925963-23926132 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 31, 134 |
| Conread position: | 230-346 |
| Cow position: | chr26:13828095-13827975 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 230-350 |
| Cow position: | chr26:7153366-7153239 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 230-395 |
| Cow position: | chr26:31633748-31633585 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 29, 115 |
| Conread position: | 230-397 |
| Cow position: | chr26:1587611-1587451 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 255-395 |
| Cow position: | chr26:10974107-10973971 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 131, 10 |
| Conread position: | 261-412 |
| Cow position: | chr26:18231354-18231206 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 97, 119 |
| Conread position: | 265-412 |
| Cow position: | chr26:19459668-19459519 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 114, 54 |
| Conread position: | 267-402 |
| Cow position: | chr26:7961612-7961484 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 118, 10 |
| Conread position: | 278-395 |
| Cow position: | chr26:25074049-25073933 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 108, 66 |
Show alignments to all cow chromosomes.