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Cow genome map

           
Conread name:
           
Ss1.1-Pig4-TMW8036O21.3
        

               
Conread position:
               
1-126
               

               
Cow position:
               
chr5:57231871-57231746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr5:43434760-43434894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-128
               

               
Cow position:
               
chr5:56624273-56624407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chr5:44868596-44868465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
63, 13
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr5:35235446-35235801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
6e-36
               

               
Alignm gaps (pig, cow):
               
63, 20
               

               
Conread position:
               
2-128
               

               
Cow position:
               
chr5:4280686-4280558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
2-374
               

               
Cow position:
               
chr5:23678440-23678814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
62, 106
               

               
Conread position:
               
2-397
               

               
Cow position:
               
chr5:42064446-42064067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
62, 20
               

               
Conread position:
               
3-109
               

               
Cow position:
               
chr5:33273938-33273831 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
22, 104
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr5:16937794-16937919 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
61, 92
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr5:18289357-18289232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
61, 12
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr5:50101138-50101264 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-128
               

               
Cow position:
               
chr5:58487613-58487485 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
3-135
               

               
Cow position:
               
chr5:29097602-29097470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
61, 77
               

               
Conread position:
               
6-128
               

               
Cow position:
               
chr5:7675921-7676045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
58, 0
               

               
Conread position:
               
7-116
               

               
Cow position:
               
chr5:57497190-57497302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
113
               

               
Alignm identity:
               
91
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
57, 0
               

               
Conread position:
               
7-397
               

               
Cow position:
               
chr5:66972666-66972293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
272
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
201, 59
               

               
Conread position:
               
8-123
               

               
Cow position:
               
chr5:17253993-17254109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
8-127
               

               
Cow position:
               
chr5:21374881-21375003 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
8-350
               

               
Cow position:
               
chr5:43992584-43992229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
13, 21
               

               
Conread position:
               
9-127
               

               
Cow position:
               
chr5:70457486-70457370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
9-378
               

               
Cow position:
               
chr5:13717326-13717685 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
150, 42
               

               
Conread position:
               
9-397
               

               
Cow position:
               
chr5:34301180-34300782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
25, 100
               

               
Conread position:
               
9-397
               

               
Cow position:
               
chr5:35208497-35208131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
55, 85
               

               
Conread position:
               
10-126
               

               
Cow position:
               
chr5:35459063-35459181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
119
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
10-129
               

               
Cow position:
               
chr5:30562159-30562041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
121
               

               
Alignm identity:
               
96
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
11-128
               

               
Cow position:
               
chr5:15770220-15770346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
11-393
               

               
Cow position:
               
chr5:11667953-11668315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
53, 9
               

               
Conread position:
               
12-128
               

               
Cow position:
               
chr5:31648646-31648529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
118
               

               
Alignm identity:
               
93
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
13-123
               

               
Cow position:
               
chr5:12562531-12562641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
112
               

               
Alignm identity:
               
90
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
51, 7
               

               
Conread position:
               
13-397
               

               
Cow position:
               
chr5:49685025-49685410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
393
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
5, 34
               

               
Conread position:
               
15-128
               

               
Cow position:
               
chr5:14419789-14419900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
115
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
49, 56
               

               
Conread position:
               
15-371
               

               
Cow position:
               
chr5:29860601-29860231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
49, 116
               

               
Conread position:
               
15-383
               

               
Cow position:
               
chr5:16179295-16179644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
49, 112
               

               
Conread position:
               
15-397
               

               
Cow position:
               
chr5:52164945-52165313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
388
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
8e-39
               

               
Alignm gaps (pig, cow):
               
49, 84
               

               
Conread position:
               
15-397
               

               
Cow position:
               
chr5:54311584-54311198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
49, 97
               

               
Conread position:
               
15-412
               

               
Cow position:
               
chr5:18574410-18574019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
273
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
49, 72
               

               
Conread position:
               
15-412
               

               
Cow position:
               
chr5:29828277-29827902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
8, 85
               

               
Conread position:
               
15-413
               

               
Cow position:
               
chr5:55956138-55955753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
49, 98
               

               
Conread position:
               
16-116
               

               
Cow position:
               
chr5:35190333-35190232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
102
               

               
Alignm identity:
               
84
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
17-116
               

               
Cow position:
               
chr5:17105071-17104972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
101
               

               
Alignm identity:
               
85
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
47, 72
               

               
Conread position:
               
20-397
               

               
Cow position:
               
chr5:30253963-30253601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
44, 61
               

               
Conread position:
               
24-395
               

               
Cow position:
               
chr5:54767664-54768042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
40, 83
               

               
Conread position:
               
29-400
               

               
Cow position:
               
chr5:57328011-57327659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
36, 70
               

               
Conread position:
               
196-393
               

               
Cow position:
               
chr5:24485372-24485565 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
63, 12
               

               
Conread position:
               
207-397
               

               
Cow position:
               
chr5:34115705-34115517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
52, 140
               

               
Conread position:
               
212-397
               

               
Cow position:
               
chr5:47888664-47888845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
55, 74
               

               
Conread position:
               
213-393
               

               
Cow position:
               
chr5:11540004-11540178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
213-395
               

               
Cow position:
               
chr5:52645034-52645212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
51, 132
               

               
Conread position:
               
214-349
               

               
Cow position:
               
chr5:1087154-1087288 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
99, 0
               

               
Conread position:
               
214-350
               

               
Cow position:
               
chr5:50575829-50575692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
214-350
               

               
Cow position:
               
chr5:56635940-56635808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
137
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
214-350
               

               
Cow position:
               
chr5:57767940-57768075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
60, 16
               

               
Conread position:
               
214-350
               

               
Cow position:
               
chr5:60448261-60448123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
214-350
               

               
Cow position:
               
chr5:76311415-76311275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
141
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
214-351
               

               
Cow position:
               
chr5:55019337-55019201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
214-377
               

               
Cow position:
               
chr5:57561568-57561404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 135
               

               
Conread position:
               
214-381
               

               
Cow position:
               
chr5:53710644-53710811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
30, 65
               

               
Conread position:
               
214-382
               

               
Cow position:
               
chr5:16206109-16206273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
44, 5
               

               
Conread position:
               
214-382
               

               
Cow position:
               
chr5:19523945-19523779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
56, 148
               

               
Conread position:
               
214-384
               

               
Cow position:
               
chr5:7140061-7140231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
45, 129
               

               
Conread position:
               
214-391
               

               
Cow position:
               
chr5:26094121-26094296 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 66
               

               
Conread position:
               
214-392
               

               
Cow position:
               
chr5:54713686-54713865 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
49, 161
               

               
Conread position:
               
214-393
               

               
Cow position:
               
chr5:3771893-3771710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
214-393
               

               
Cow position:
               
chr5:56820216-56820398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
45, 11
               

               
Conread position:
               
214-393
               

               
Cow position:
               
chr5:58856148-58855967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
214-394
               

               
Cow position:
               
chr5:30487287-30487097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
41, 169
               

               
Conread position:
               
214-395
               

               
Cow position:
               
chr5:24349152-24348975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 131
               

               
Conread position:
               
214-395
               

               
Cow position:
               
chr5:36855249-36855075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
45, 129
               

               
Conread position:
               
214-395
               

               
Cow position:
               
chr5:47323507-47323322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
135, 11
               

               
Conread position:
               
214-395
               

               
Cow position:
               
chr5:50972575-50972398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
62, 75
               

               
Conread position:
               
214-395
               

               
Cow position:
               
chr5:54350316-54350497 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 146
               

               
Conread position:
               
214-395
               

               
Cow position:
               
chr5:56467736-56467568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
214-396
               

               
Cow position:
               
chr5:14550539-14550715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
171, 63
               

               
Conread position:
               
214-396
               

               
Cow position:
               
chr5:28224498-28224319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 131
               

               
Conread position:
               
214-396
               

               
Cow position:
               
chr5:30949870-30950049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 84
               

               
Conread position:
               
214-396
               

               
Cow position:
               
chr5:53855745-53855561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 86
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:4031944-4032125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
44, 145
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:8024148-8024329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
45, 134
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:9089978-9090154 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
45, 57
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:12761073-12761250 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
172, 45
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:15479171-15478979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
43, 105
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:16509145-16508960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
53, 136
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:21039933-21040110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
165, 45
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:21920426-21920237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
31, 138
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:21964334-21964151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:26262629-26262806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:28459663-28459843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
172, 61
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:29212989-29212811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
30, 39
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:33414363-33414545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:37808618-37808809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
42, 90
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:40039723-40039901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
58, 130
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:41165133-41164949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
45, 161
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:47696396-47696573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
34, 78
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:49361947-49362122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
45, 87
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:51935235-51935052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
172, 130
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:52000268-52000088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
45, 131
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:58793562-58793745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
44, 59
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:61840233-61840052 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
172, 38
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:62142721-62142536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
45, 112
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:64137301-64137117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
56, 134
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:65601502-65601326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
62, 82
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:65883727-65883910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
47, 133
               

               
Conread position:
               
214-397
               

               
Cow position:
               
chr5:65886963-65887145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
6e-26
               

               
Alignm gaps (pig, cow):
               
172, 130
               

               
Conread position:
               
214-398
               

               
Cow position:
               
chr5:7057356-7057542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
49, 129
               

               
Conread position:
               
214-398
               

               
Cow position:
               
chr5:28926135-28926319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 133
               

               
Conread position:
               
214-399
               

               
Cow position:
               
chr5:34050163-34049975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
53, 134
               

               
Conread position:
               
214-400
               

               
Cow position:
               
chr5:16893726-16893909 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
43, 115
               

               
Conread position:
               
214-400
               

               
Cow position:
               
chr5:21944443-21944255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
63, 133
               

               
Conread position:
               
214-400
               

               
Cow position:
               
chr5:57935063-57935246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
51, 133
               

               
Conread position:
               
214-401
               

               
Cow position:
               
chr5:67540156-67540341 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
51, 86
               

               
Conread position:
               
214-402
               

               
Cow position:
               
chr5:58144556-58144743 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
34, 132
               

               
Conread position:
               
214-410
               

               
Cow position:
               
chr5:2309511-2309706 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
50, 80
               

               
Conread position:
               
214-410
               

               
Cow position:
               
chr5:29903478-29903668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
190, 47
               

               
Conread position:
               
214-411
               

               
Cow position:
               
chr5:18899021-18898833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
51, 91
               

               
Conread position:
               
214-411
               

               
Cow position:
               
chr5:29097413-29097213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
45, 194
               

               
Conread position:
               
214-412
               

               
Cow position:
               
chr5:458534-458334 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
126, 188
               

               
Conread position:
               
214-412
               

               
Cow position:
               
chr5:72564809-72564610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 134
               

               
Conread position:
               
214-413
               

               
Cow position:
               
chr5:56680296-56680098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
34, 68
               

               
Conread position:
               
214-449
               

               
Cow position:
               
chr5:3639442-3639672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
45, 131
               

               
Conread position:
               
215-396
               

               
Cow position:
               
chr5:25447605-25447431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
168, 129
               

               
Conread position:
               
215-397
               

               
Cow position:
               
chr5:32696778-32696954 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
48, 97
               

               
Conread position:
               
215-397
               

               
Cow position:
               
chr5:32956050-32956230 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
33, 131
               

               
Conread position:
               
215-397
               

               
Cow position:
               
chr5:47870997-47871181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
49, 16
               

               
Conread position:
               
215-397
               

               
Cow position:
               
chr5:63763510-63763326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
57, 34
               

               
Conread position:
               
215-400
               

               
Cow position:
               
chr5:3242433-3242611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 130
               

               
Conread position:
               
215-407
               

               
Cow position:
               
chr5:42777809-42777618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
44, 132
               

               
Conread position:
               
215-411
               

               
Cow position:
               
chr5:41604672-41604468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
49, 35
               

               
Conread position:
               
215-412
               

               
Cow position:
               
chr5:42667343-42667541 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
41, 93
               

               
Conread position:
               
216-347
               

               
Cow position:
               
chr5:72286872-72287004 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
93, 43
               

               
Conread position:
               
216-348
               

               
Cow position:
               
chr5:51800929-51801063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
216-376
               

               
Cow position:
               
chr5:4617411-4617247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
50, 105
               

               
Conread position:
               
216-393
               

               
Cow position:
               
chr5:16185131-16184951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
46, 149
               

               
Conread position:
               
216-395
               

               
Cow position:
               
chr5:2500136-2500321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
27, 135
               

               
Conread position:
               
216-397
               

               
Cow position:
               
chr5:62985567-62985386 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
43, 11
               

               
Conread position:
               
217-393
               

               
Cow position:
               
chr5:30638821-30638990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
48, 84
               

               
Conread position:
               
217-397
               

               
Cow position:
               
chr5:20345204-20345026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 92
               

               
Conread position:
               
217-397
               

               
Cow position:
               
chr5:35247070-35247244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
38, 73
               

               
Conread position:
               
217-397
               

               
Cow position:
               
chr5:49821182-49821009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 42
               

               
Conread position:
               
217-397
               

               
Cow position:
               
chr5:59115428-59115248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
56, 42
               

               
Conread position:
               
217-397
               

               
Cow position:
               
chr5:71579218-71579040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
43, 130
               

               
Conread position:
               
217-397
               

               
Cow position:
               
chr5:75436844-75437027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
49, 81
               

               
Conread position:
               
217-413
               

               
Cow position:
               
chr5:51490722-51490907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
169, 38
               

               
Conread position:
               
218-397
               

               
Cow position:
               
chr5:8994524-8994700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
40, 126
               

               
Conread position:
               
220-351
               

               
Cow position:
               
chr5:56469783-56469918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
220-377
               

               
Cow position:
               
chr5:28946020-28946183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
28, 129
               

               
Conread position:
               
220-395
               

               
Cow position:
               
chr5:23856121-23856298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
39, 14
               

               
Conread position:
               
220-396
               

               
Cow position:
               
chr5:55966841-55967012 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 125
               

               
Conread position:
               
220-397
               

               
Cow position:
               
chr5:4552184-4552001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
220-397
               

               
Cow position:
               
chr5:44847985-44848159 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
127, 39
               

               
Conread position:
               
220-400
               

               
Cow position:
               
chr5:14314567-14314388 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
33, 129
               

               
Conread position:
               
220-402
               

               
Cow position:
               
chr5:7921365-7921539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
165, 34
               

               
Conread position:
               
220-411
               

               
Cow position:
               
chr5:21617497-21617310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
220-412
               

               
Cow position:
               
chr5:63987406-63987598 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
45, 93
               

               
Conread position:
               
220-417
               

               
Cow position:
               
chr5:26790416-26790610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
51, 39
               

               
Conread position:
               
221-395
               

               
Cow position:
               
chr5:17644616-17644788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
43, 122
               

               
Conread position:
               
221-397
               

               
Cow position:
               
chr5:12709927-12709751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
43, 125
               

               
Conread position:
               
221-397
               

               
Cow position:
               
chr5:54086578-54086399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
38, 11
               

               
Conread position:
               
221-402
               

               
Cow position:
               
chr5:55756382-55756569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
5e-24
               

               
Alignm gaps (pig, cow):
               
35, 130
               

               
Conread position:
               
221-410
               

               
Cow position:
               
chr5:55176931-55176740 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
27, 11
               

               
Conread position:
               
222-397
               

               
Cow position:
               
chr5:71494858-71494683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 54
               

               
Conread position:
               
222-412
               

               
Cow position:
               
chr5:46122316-46122505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
223-397
               

               
Cow position:
               
chr5:44583096-44583259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
224-397
               

               
Cow position:
               
chr5:45037049-45036887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
161, 24
               

               
Conread position:
               
224-404
               

               
Cow position:
               
chr5:54060313-54060137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 67
               

               
Conread position:
               
227-384
               

               
Cow position:
               
chr5:34192938-34192779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 96
               

               
Conread position:
               
227-397
               

               
Cow position:
               
chr5:6130386-6130212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
227-397
               

               
Cow position:
               
chr5:43474877-43474713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
158, 117
               

               
Conread position:
               
227-397
               

               
Cow position:
               
chr5:65924657-65924830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
41, 32
               

               
Conread position:
               
227-417
               

               
Cow position:
               
chr5:18289163-18288975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
31, 120
               

               
Conread position:
               
228-397
               

               
Cow position:
               
chr5:4221011-4220850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
17, 26
               

               
Conread position:
               
229-395
               

               
Cow position:
               
chr5:75230705-75230548 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
157, 32
               

               
Conread position:
               
254-397
               

               
Cow position:
               
chr5:26377666-26377807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 34
               

               
Conread position:
               
255-397
               

               
Cow position:
               
chr5:40356862-40357001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
11, 90
               

               
Conread position:
               
256-397
               

               
Cow position:
               
chr5:56433806-56433670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
7, 87
               

               
Conread position:
               
261-393
               

               
Cow position:
               
chr5:65932932-65933060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
134
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
7e-27
               

               
Alignm gaps (pig, cow):
               
124, 81
               

               
Conread position:
               
265-395
               

               
Cow position:
               
chr5:57271273-57271400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
120, 79
               

               
Conread position:
               
271-400
               

               
Cow position:
               
chr5:3492181-3492057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
103
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
107, 73
               
Show alignments to all cow chromosomes.