Cow genome map

Conread name: Ss1.1-Pig4-TMW8037D06.5

Conread position: 6-564
Cow position: chr1:55320107-55320669 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 366
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 30, 37

Conread position: 6-565
Cow position: chr1:72184894-72185477 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 379
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 30, 37

Conread position: 6-569
Cow position: chr1:69416305-69416883 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 374
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 30, 48

Conread position: 6-595
Cow position: chr1:85531392-85531982 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 388
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 16, 58

Conread position: 10-370
Cow position: chr1:82910852-82911222 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 250
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 7, 34

Conread position: 10-565
Cow position: chr1:67003132-67002560 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 379
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 7, 34

Conread position: 10-566
Cow position: chr1:10724556-10723984 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 10-566
Cow position: chr1:17010760-17011333 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 10-566
Cow position: chr1:26585072-26584502 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 10-566
Cow position: chr1:89494252-89494818 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 377
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 5, 34

Conread position: 10-567
Cow position: chr1:86546164-86546736 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 372
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 7, 30

Conread position: 13-354
Cow position: chr1:38386465-38386811 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 234
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 89, 29

Conread position: 13-370
Cow position: chr1:70418156-70418522 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 239
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 23, 30

Conread position: 13-565
Cow position: chr1:28875042-28874470 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 26

Conread position: 15-601
Cow position: chr1:56192188-56192804 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 411
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 21, 28

Conread position: 16-370
Cow position: chr1:6769470-6769113 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 247
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 27, 20

Conread position: 16-370
Cow position: chr1:27112472-27112825 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 238
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 47

Conread position: 16-475
Cow position: chr1:25054247-25053786 (view UCSC Genome Browser custom track)
Alignm length: 478
Alignm identity: 301
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 20, 27

Conread position: 16-507
Cow position: chr1:16215526-16216020 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 339
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 20, 37

Conread position: 16-550
Cow position: chr1:30222381-30221841 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 371
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 55, 73

Conread position: 16-555
Cow position: chr1:29036270-29035716 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 367
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 20, 27

Conread position: 16-561
Cow position: chr1:33351533-33350987 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 357
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 133, 46

Conread position: 16-563
Cow position: chr1:63603800-63604366 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 361
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 127, 23

Conread position: 16-564
Cow position: chr1:31364132-31364695 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 374
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 20, 27

Conread position: 16-564
Cow position: chr1:32565960-32566520 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 359
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr1:3933290-3933854 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 9

Conread position: 16-565
Cow position: chr1:30533051-30533617 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr1:33714052-33713473 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 47

Conread position: 16-565
Cow position: chr1:49972202-49972766 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 47

Conread position: 16-565
Cow position: chr1:52357287-52357855 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 375
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr1:56142389-56142941 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 47

Conread position: 16-565
Cow position: chr1:57364373-57364940 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 371
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 43, 23

Conread position: 16-565
Cow position: chr1:65388286-65387719 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 370
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr1:72985420-72984877 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 359
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 127, 47

Conread position: 16-565
Cow position: chr1:74284711-74285274 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr1:79454984-79455550 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-566
Cow position: chr1:33898227-33897662 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 374
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 20, 27

Conread position: 16-566
Cow position: chr1:62804211-62804773 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 368
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 20, 27

Conread position: 16-567
Cow position: chr1:21089401-21088833 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-567
Cow position: chr1:76750003-76750573 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-569
Cow position: chr1:34694658-34694082 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-579
Cow position: chr1:24653237-24652654 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 53

Conread position: 16-582
Cow position: chr1:30074841-30074256 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 389
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 86, 47

Conread position: 16-582
Cow position: chr1:67833163-67833751 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 376
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 127, 47

Conread position: 16-582
Cow position: chr1:76619508-76620089 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-582
Cow position: chr1:93856482-93855900 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 23

Conread position: 16-585
Cow position: chr1:12060238-12060822 (view UCSC Genome Browser custom track)
Alignm length: 591
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-586
Cow position: chr1:58177186-58177742 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 377
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 20, 27

Conread position: 16-614
Cow position: chr1:91596747-91597357 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 397
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 127, 47

Conread position: 17-474
Cow position: chr1:39107546-39107079 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 301
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 139, 46

Conread position: 17-566
Cow position: chr1:59207110-59207677 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 26

Conread position: 17-576
Cow position: chr1:72082723-72082159 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 373
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 19, 26

Conread position: 17-585
Cow position: chr1:40682775-40683357 (view UCSC Genome Browser custom track)
Alignm length: 596
Alignm identity: 383
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 19, 37

Conread position: 18-556
Cow position: chr1:9260454-9259897 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 363
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 18, 25

Conread position: 18-565
Cow position: chr1:91891152-91891716 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 25

Conread position: 18-565
Cow position: chr1:102433065-102433637 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 382
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 84, 45

Conread position: 18-566
Cow position: chr1:71560779-71561343 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 21

Conread position: 18-585
Cow position: chr1:87970278-87969702 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 375
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 18, 36

Conread position: 20-566
Cow position: chr1:39545752-39545189 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 23

Conread position: 39-371
Cow position: chr1:21433962-21434298 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 213
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 117, 100

Conread position: 49-550
Cow position: chr1:71740203-71740725 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 88

Conread position: 50-565
Cow position: chr1:68605603-68606145 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 356
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 93, 87

Conread position: 54-583
Cow position: chr1:99218635-99219151 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 367
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 195, 31

Conread position: 54-584
Cow position: chr1:102780404-102780950 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 354
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 95, 133

Conread position: 55-561
Cow position: chr1:29226784-29226291 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 336
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 88, 14

Conread position: 55-565
Cow position: chr1:40231281-40231786 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 337
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 13, 64

Conread position: 57-565
Cow position: chr1:88132708-88132179 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 340
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 86, 80

Conread position: 57-585
Cow position: chr1:24442431-24442977 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 352
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 86, 80

Conread position: 58-354
Cow position: chr1:30520716-30520413 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 85, 26

Conread position: 58-370
Cow position: chr1:99316141-99315819 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 61

Conread position: 58-561
Cow position: chr1:76702406-76702897 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 328
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 105

Conread position: 58-565
Cow position: chr1:25551898-25551368 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 349
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 13, 91

Conread position: 58-566
Cow position: chr1:50988370-50988881 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 31

Conread position: 58-582
Cow position: chr1:69404928-69404389 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 359
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 85, 12

Conread position: 58-590
Cow position: chr1:48248827-48248297 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 349
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 103, 46

Conread position: 58-619
Cow position: chr1:77463567-77463004 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 124, 78

Conread position: 59-568
Cow position: chr1:34508339-34507824 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 153

Conread position: 59-576
Cow position: chr1:85778526-85779058 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 349
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 84, 26

Conread position: 60-519
Cow position: chr1:53563918-53563459 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 311
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 25, 47

Conread position: 63-455
Cow position: chr1:85824412-85824000 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 276
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 50, 25

Conread position: 63-565
Cow position: chr1:55778508-55777992 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 337
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 28, 64

Conread position: 65-565
Cow position: chr1:57745473-57745992 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 334
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 95, 111

Conread position: 67-586
Cow position: chr1:72945650-72945131 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 334
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 56

Conread position: 69-622
Cow position: chr1:50941376-50941936 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 365
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 68, 314

Conread position: 81-622
Cow position: chr1:29412295-29412835 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 347
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 56, 297

Conread position: 83-350
Cow position: chr1:72092991-72093259 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 64, 56

Conread position: 90-475
Cow position: chr1:31812915-31812512 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 267
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 53, 47

Conread position: 90-565
Cow position: chr1:33552835-33552332 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 325
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 68, 342

Conread position: 95-367
Cow position: chr1:89482842-89482560 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 66, 0

Conread position: 104-581
Cow position: chr1:31327631-31328087 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 310
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 116, 35

Conread position: 109-520
Cow position: chr1:81840626-81841032 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 276
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 114, 106

Conread position: 128-565
Cow position: chr1:81926820-81927255 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 271
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 55, 8

Conread position: 180-564
Cow position: chr1:81862190-81862579 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 265
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 171, 53

Conread position: 180-565
Cow position: chr1:62242860-62243250 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 264
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 178, 31

Conread position: 180-623
Cow position: chr1:26517096-26517541 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 300
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 170, 44

Conread position: 190-498
Cow position: chr1:24601011-24600688 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 196
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 62, 81

Conread position: 225-580
Cow position: chr1:73197285-73197647 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 242
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 147, 67

Conread position: 228-565
Cow position: chr1:90607129-90607475 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 230
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 130, 25

Conread position: 229-466
Cow position: chr1:29607315-29607563 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 171
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 127, 177

Conread position: 229-566
Cow position: chr1:22345746-22345406 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 234
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 98, 5

Conread position: 229-566
Cow position: chr1:50210093-50210440 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 237
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 128, 185

Conread position: 229-569
Cow position: chr1:51877267-51877602 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 230
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 127, 61

Conread position: 229-587
Cow position: chr1:88387973-88387610 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 240
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 127, 97

Conread position: 232-566
Cow position: chr1:4209954-4209610 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 229
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 125, 182

Conread position: 236-562
Cow position: chr1:43984365-43984700 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 219
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 120, 195

Conread position: 242-558
Cow position: chr1:67326222-67326523 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 212
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 115, 122

Conread position: 242-564
Cow position: chr1:64480913-64481217 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 227
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 114, 72

Conread position: 245-561
Cow position: chr1:94252513-94252209 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 225
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 111, 29

Conread position: 247-560
Cow position: chr1:51978892-51978581 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 231
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 31, 75

Conread position: 247-567
Cow position: chr1:101794992-101794683 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 211
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 111, 149

Conread position: 250-566
Cow position: chr1:30223404-30223082 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 225
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 26, 17

Conread position: 256-565
Cow position: chr1:50247988-50248297 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 222
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 68, 148

Conread position: 268-561
Cow position: chr1:89732812-89733100 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 186
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 88, 103

Conread position: 272-551
Cow position: chr1:47766597-47766317 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 86, 132

Conread position: 284-596
Cow position: chr1:40502167-40502477 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 100, 76

Conread position: 321-566
Cow position: chr1:80445790-80445553 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 164
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 339-564
Cow position: chr1:18026134-18026356 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 146, 24

Conread position: 378-567
Cow position: chr1:77614002-77613820 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 385-563
Cow position: chr1:66487298-66487121 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 126
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 174, 11

Conread position: 530-782
Cow position: chr1:102730500-102730756 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 94

Conread position: 530-816
Cow position: chr1:86110489-86110763 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 26, 83

Conread position: 531-815
Cow position: chr1:1980855-1981140 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 186
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 38, 22

Conread position: 537-811
Cow position: chr1:38706605-38706877 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 179
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 79

Conread position: 537-811
Cow position: chr1:95835545-95835821 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 87

Conread position: 537-812
Cow position: chr1:20104519-20104242 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 24, 90

Conread position: 537-812
Cow position: chr1:44507213-44506947 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 186
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 36

Conread position: 537-816
Cow position: chr1:78097169-78096899 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 8, 0

Conread position: 540-816
Cow position: chr1:56618416-56618678 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 184
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 542-813
Cow position: chr1:42887043-42887302 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 184
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 13, 31

Conread position: 544-809
Cow position: chr1:41137906-41138167 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 12

Conread position: 546-815
Cow position: chr1:54267702-54267964 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 184
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 75, 0

Conread position: 549-816
Cow position: chr1:43311532-43311800 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 174
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 48, 73

Conread position: 552-780
Cow position: chr1:70483103-70483326 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 156
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 69, 0

Conread position: 552-814
Cow position: chr1:84103828-84104087 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 175
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 134, 37

Conread position: 553-810
Cow position: chr1:42175966-42175700 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 28, 75

Conread position: 555-772
Cow position: chr1:55685750-55685962 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 152
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 33, 0

Conread position: 555-811
Cow position: chr1:90904529-90904778 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 173
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 33, 0

Conread position: 555-812
Cow position: chr1:50432251-50432510 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 19, 67

Conread position: 555-816
Cow position: chr1:196776-197033 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 174
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 67

Conread position: 555-816
Cow position: chr1:86682335-86682587 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 182
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 37, 18

Conread position: 557-810
Cow position: chr1:4444614-4444864 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 165
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 248, 32

Conread position: 557-812
Cow position: chr1:75745089-75744838 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 15, 53

Conread position: 557-814
Cow position: chr1:88913548-88913296 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 174
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 34, 66

Conread position: 558-806
Cow position: chr1:81290729-81290489 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 30, 0

Conread position: 558-814
Cow position: chr1:72422177-72422434 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 27, 66

Conread position: 559-780
Cow position: chr1:71945854-71946076 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 59

Conread position: 559-816
Cow position: chr1:71665710-71665961 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 173
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 88, 14

Conread position: 563-813
Cow position: chr1:22824133-22823879 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 170
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 61

Conread position: 573-806
Cow position: chr1:67654115-67654338 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 157
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 573-816
Cow position: chr1:21955161-21955400 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 163
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 79, 48

Conread position: 573-816
Cow position: chr1:78811249-78811011 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 159
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 574-811
Cow position: chr1:70538818-70538588 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 162
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 12, 49

Conread position: 574-816
Cow position: chr1:98912219-98911981 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 166
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 17, 48

Conread position: 575-806
Cow position: chr1:55753011-55753233 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 198, 13

Conread position: 575-812
Cow position: chr1:91023258-91023489 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 41

Conread position: 575-815
Cow position: chr1:19970384-19970621 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 164
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 37

Conread position: 575-816
Cow position: chr1:62519575-62519337 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 161
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 111, 46

Conread position: 575-816
Cow position: chr1:81481176-81481410 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 169
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 576-814
Cow position: chr1:81568820-81569052 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 9, 46

Conread position: 576-816
Cow position: chr1:61885121-61884885 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 170
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 15, 46

Conread position: 576-816
Cow position: chr1:82936396-82936624 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 9, 33

Conread position: 577-804
Cow position: chr1:45315423-45315652 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 164
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 14, 45

Conread position: 577-806
Cow position: chr1:25383876-25383651 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 44, 0

Conread position: 577-815
Cow position: chr1:102529645-102529883 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 169
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 8, 45

Conread position: 578-811
Cow position: chr1:56225673-56225445 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 7, 28

Conread position: 578-814
Cow position: chr1:83072650-83072417 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 45

Conread position: 579-808
Cow position: chr1:61011380-61011161 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 155
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 580-806
Cow position: chr1:64803893-64804120 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 152
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 75, 42

Conread position: 580-812
Cow position: chr1:52139424-52139658 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 160
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 181, 41

Conread position: 583-805
Cow position: chr1:52912692-52912913 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 55, 5

Conread position: 584-809
Cow position: chr1:24530698-24530481 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 154
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 584-815
Cow position: chr1:12464465-12464691 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 154
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 58, 0

Conread position: 588-814
Cow position: chr1:71078766-71078987 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 220, 33

Conread position: 590-805
Cow position: chr1:41056873-41056661 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 96, 9

Conread position: 590-808
Cow position: chr1:635490-635705 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 148
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 73, 31

Conread position: 590-810
Cow position: chr1:79146620-79146838 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 66

Conread position: 590-816
Cow position: chr1:57575570-57575792 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 154
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 32, 0

Conread position: 590-816
Cow position: chr1:64572708-64572487 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 152
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 590-816
Cow position: chr1:79004170-79003948 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 81, 31

Conread position: 590-816
Cow position: chr1:89449092-89448872 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 158
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 31, 0

Conread position: 591-812
Cow position: chr1:62964461-62964243 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 152
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 83, 30

Conread position: 591-816
Cow position: chr1:58754605-58754822 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 157
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 30, 0

Conread position: 592-816
Cow position: chr1:8287438-8287659 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 215, 33

Conread position: 596-816
Cow position: chr1:89388531-89388312 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 157
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 172, 26

Conread position: 599-812
Cow position: chr1:43388869-43389071 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 149
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 23, 0

Conread position: 604-806
Cow position: chr1:87198000-87197802 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 17, 0

Conread position: 618-811
Cow position: chr1:61741796-61741990 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 133
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 47, 120

Conread position: 618-815
Cow position: chr1:77232400-77232605 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 143
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 0

Conread position: 618-815
Cow position: chr1:89158538-89158727 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 176, 29

Conread position: 624-812
Cow position: chr1:3965997-3965812 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 130
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 119, 0

Conread position: 625-813
Cow position: chr1:19962209-19962029 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 0

Show alignments to all cow chromosomes.