Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037D06.5 |
| Conread position: | 10-317 |
| Cow position: | chr12:25267485-25267802 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 10-525 |
| Cow position: | chr12:42606324-42606857 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 352 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 10-566 |
| Cow position: | chr12:3362859-3362292 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 367 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 10-566 |
| Cow position: | chr12:21210590-21210014 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 33 |
| Conread position: | 10-566 |
| Cow position: | chr12:21429935-21429359 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 45 |
| Conread position: | 13-565 |
| Cow position: | chr12:22203792-22204361 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 368 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 16-379 |
| Cow position: | chr12:25098559-25098929 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-475 |
| Cow position: | chr12:30685655-30685186 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 306 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 12, 20 |
| Conread position: | 16-565 |
| Cow position: | chr12:6404719-6405282 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 370 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-565 |
| Cow position: | chr12:14660434-14660998 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 364 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 39, 23 |
| Conread position: | 16-565 |
| Cow position: | chr12:42857617-42858184 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-582 |
| Cow position: | chr12:27930988-27931575 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-584 |
| Cow position: | chr12:48470977-48471550 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-585 |
| Cow position: | chr12:27854045-27854630 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-590 |
| Cow position: | chr12:21483008-21482443 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 354 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 108, 202 |
| Conread position: | 17-576 |
| Cow position: | chr12:15078734-15078187 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 28 |
| Conread position: | 17-585 |
| Cow position: | chr12:19222888-19222321 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 378 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 139, 52 |
| Conread position: | 45-528 |
| Cow position: | chr12:30677532-30677025 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 343 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 23, 7 |
| Conread position: | 47-413 |
| Cow position: | chr12:9400801-9401170 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 242 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 95, 16 |
| Conread position: | 50-576 |
| Cow position: | chr12:8676200-8676758 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 357 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 18, 365 |
| Conread position: | 54-566 |
| Cow position: | chr12:1887684-1888208 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 15, 35 |
| Conread position: | 55-370 |
| Cow position: | chr12:12294437-12294117 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 86 |
| Conread position: | 55-564 |
| Cow position: | chr12:35346404-35345888 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 344 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 93, 46 |
| Conread position: | 55-567 |
| Cow position: | chr12:1776070-1776607 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 363 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 55-592 |
| Cow position: | chr12:8138278-8138817 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 360 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 19, 94 |
| Conread position: | 56-448 |
| Cow position: | chr12:3970673-3971071 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 12, 50 |
| Conread position: | 57-538 |
| Cow position: | chr12:22567877-22568378 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 86, 80 |
| Conread position: | 57-596 |
| Cow position: | chr12:23161032-23161596 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 98, 80 |
| Conread position: | 60-561 |
| Cow position: | chr12:5145530-5145020 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 42, 47 |
| Conread position: | 63-565 |
| Cow position: | chr12:20996225-20996734 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 9, 137 |
| Conread position: | 75-605 |
| Cow position: | chr12:41464665-41465207 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 357 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 176-596 |
| Cow position: | chr12:31097957-31098379 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 270 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 173, 29 |
| Conread position: | 228-560 |
| Cow position: | chr12:32677298-32677627 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 15, 6 |
| Conread position: | 229-566 |
| Cow position: | chr12:24994265-24994612 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 82, 78 |
| Conread position: | 236-566 |
| Cow position: | chr12:24928812-24929138 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 110, 58 |
| Conread position: | 244-582 |
| Cow position: | chr12:365880-366232 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 239 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 22, 65 |
| Conread position: | 281-582 |
| Cow position: | chr12:11099863-11099561 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 535-816 |
| Cow position: | chr12:21780374-21780092 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 20, 91 |
| Conread position: | 536-815 |
| Cow position: | chr12:25343990-25343710 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 537-816 |
| Cow position: | chr12:16670469-16670194 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 190 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 52, 5 |
| Conread position: | 539-816 |
| Cow position: | chr12:6241972-6242250 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 22, 84 |
| Conread position: | 548-812 |
| Cow position: | chr12:30590964-30590696 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 11, 89 |
| Conread position: | 553-811 |
| Cow position: | chr12:27176821-27176567 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 553-811 |
| Cow position: | chr12:27192183-27192437 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 135, 29 |
| Conread position: | 555-816 |
| Cow position: | chr12:6241508-6241249 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 100, 33 |
| Conread position: | 556-809 |
| Cow position: | chr12:36261876-36261624 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 131, 38 |
| Conread position: | 556-812 |
| Cow position: | chr12:17269983-17269734 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 556-813 |
| Cow position: | chr12:18123853-18123600 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 179 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 18, 68 |
| Conread position: | 557-806 |
| Cow position: | chr12:7884496-7884743 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 34, 65 |
| Conread position: | 557-816 |
| Cow position: | chr12:12233066-12232811 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 559-789 |
| Cow position: | chr12:14986928-14986704 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 563-816 |
| Cow position: | chr12:33851533-33851289 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 564-816 |
| Cow position: | chr12:25561544-25561298 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 13, 59 |
| Conread position: | 572-816 |
| Cow position: | chr12:28790225-28789973 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 96, 50 |
| Conread position: | 574-805 |
| Cow position: | chr12:20776763-20776982 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 574-816 |
| Cow position: | chr12:18518837-18518601 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 574-816 |
| Cow position: | chr12:37169783-37170018 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 576-812 |
| Cow position: | chr12:3371384-3371610 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 580-806 |
| Cow position: | chr12:33949060-33948842 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 590-805 |
| Cow position: | chr12:9143534-9143327 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 590-806 |
| Cow position: | chr12:45092590-45092384 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 590-816 |
| Cow position: | chr12:30745866-30745648 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 211, 31 |
| Conread position: | 591-795 |
| Cow position: | chr12:15122474-15122273 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 167, 30 |
| Conread position: | 592-816 |
| Cow position: | chr12:17252055-17252270 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 113, 29 |
| Conread position: | 595-816 |
| Cow position: | chr12:15089661-15089444 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 599-805 |
| Cow position: | chr12:24663261-24663053 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 69, 22 |
| Conread position: | 624-806 |
| Cow position: | chr12:37514168-37514343 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 639-816 |
| Cow position: | chr12:27037347-27037522 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 650-806 |
| Cow position: | chr12:15260855-15260701 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
Show alignments to all cow chromosomes.