Cow genome map

Conread name: Ss1.1-Pig4-TMW8037D06.5

Conread position: 5-565
Cow position: chr18:51482879-51482304 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 373
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 9, 39

Conread position: 6-549
Cow position: chr18:14422294-14421743 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 358
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 11, 34

Conread position: 6-565
Cow position: chr18:14417993-14417414 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 375
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 11, 38

Conread position: 6-566
Cow position: chr18:37559543-37558982 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 368
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 106, 66

Conread position: 10-361
Cow position: chr18:23660479-23660843 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 246
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 7, 34

Conread position: 10-556
Cow position: chr18:19354387-19353821 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 54

Conread position: 10-556
Cow position: chr18:47743511-47742960 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 54

Conread position: 10-565
Cow position: chr18:23799664-23799095 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 10-567
Cow position: chr18:48810131-48809581 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 358
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 133, 58

Conread position: 11-447
Cow position: chr18:23441800-23442247 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 287
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 132, 52

Conread position: 11-586
Cow position: chr18:51274066-51274660 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 387
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 145, 29

Conread position: 13-317
Cow position: chr18:16275703-16276013 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 205
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 134, 50

Conread position: 16-361
Cow position: chr18:54107118-54106756 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 235
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 127, 39

Conread position: 16-370
Cow position: chr18:11272845-11273208 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 246
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 20, 38

Conread position: 16-370
Cow position: chr18:52654823-52654465 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 242
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 127, 26

Conread position: 16-441
Cow position: chr18:16136668-16137101 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 278
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 139, 27

Conread position: 16-565
Cow position: chr18:14132403-14131841 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 368
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr18:29864598-29865164 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr18:37507975-37507406 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 373
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 20, 38

Conread position: 16-585
Cow position: chr18:16174608-16175192 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 47

Conread position: 16-586
Cow position: chr18:17961736-17962321 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 387
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 23, 28

Conread position: 16-596
Cow position: chr18:15852653-15852070 (view UCSC Genome Browser custom track)
Alignm length: 602
Alignm identity: 380
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 25, 98

Conread position: 17-620
Cow position: chr18:37490833-37490216 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 409
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 19, 37

Conread position: 20-552
Cow position: chr18:12993083-12992555 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 348
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 23

Conread position: 48-546
Cow position: chr18:44049658-44049156 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 326
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 23, 30

Conread position: 56-567
Cow position: chr18:25365143-25364611 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 353
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 87, 81

Conread position: 57-582
Cow position: chr18:29238859-29238322 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 50

Conread position: 58-561
Cow position: chr18:19486119-19485590 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 357

Conread position: 58-565
Cow position: chr18:36510591-36510062 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 368

Conread position: 58-565
Cow position: chr18:54004204-54004727 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 340
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 9, 343

Conread position: 63-582
Cow position: chr18:33270868-33270346 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 350
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 58, 75

Conread position: 67-561
Cow position: chr18:46883711-46884199 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 327
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 116, 5

Conread position: 75-370
Cow position: chr18:24714231-24714540 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 219
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 68, 62

Conread position: 76-472
Cow position: chr18:37781512-37781937 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 289
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 82, 175

Conread position: 81-565
Cow position: chr18:51343633-51343133 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 325
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 68, 56

Conread position: 82-569
Cow position: chr18:15857139-15856661 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 316
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 73, 46

Conread position: 88-566
Cow position: chr18:17999514-18000008 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 342
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 55, 40

Conread position: 94-370
Cow position: chr18:48469244-48469531 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 206
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 53, 0

Conread position: 98-566
Cow position: chr18:54169591-54170063 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 317
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 51, 5

Conread position: 128-472
Cow position: chr18:33344065-33343727 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 230
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 11, 74

Conread position: 143-620
Cow position: chr18:40315567-40316044 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 322
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 40, 15

Conread position: 180-565
Cow position: chr18:16089955-16089565 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 258
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 178, 44

Conread position: 181-550
Cow position: chr18:35054958-35054589 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 254
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 177, 42

Conread position: 228-576
Cow position: chr18:19404817-19405143 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 239
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 340, 109

Conread position: 237-438
Cow position: chr18:33301180-33300986 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 135, 5

Conread position: 245-567
Cow position: chr18:8100664-8100975 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 214
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 112, 27

Conread position: 248-620
Cow position: chr18:45185049-45184668 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 258
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 109, 24

Conread position: 257-565
Cow position: chr18:41839056-41839359 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 94, 12

Conread position: 268-566
Cow position: chr18:26244870-26245178 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 214
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 87, 146

Conread position: 269-567
Cow position: chr18:206736-207034 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 205
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 87, 127

Conread position: 277-585
Cow position: chr18:56014318-56014011 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 199
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 56, 63

Conread position: 280-550
Cow position: chr18:37157485-37157766 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 193
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 74, 127

Conread position: 285-567
Cow position: chr18:24574244-24574508 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 90, 18

Conread position: 290-544
Cow position: chr18:2645807-2646056 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 173
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 68, 21

Conread position: 294-578
Cow position: chr18:38342578-38342858 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 193
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 64, 81

Conread position: 298-519
Cow position: chr18:46633216-46633442 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 154
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 55, 177

Conread position: 370-565
Cow position: chr18:52652551-52652358 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 141
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 7, 21

Conread position: 546-812
Cow position: chr18:1571042-1571298 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 182
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 10, 0

Conread position: 554-816
Cow position: chr18:42431898-42432159 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 182
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 22, 70

Conread position: 555-806
Cow position: chr18:48713733-48713494 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 173
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 30, 67

Conread position: 556-810
Cow position: chr18:55505596-55505347 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 36, 71

Conread position: 556-815
Cow position: chr18:55693007-55692750 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 167
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 132, 69

Conread position: 557-812
Cow position: chr18:31556967-31557224 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 171
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 11, 66

Conread position: 559-815
Cow position: chr18:11791104-11790859 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 170
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 0

Conread position: 560-815
Cow position: chr18:37189106-37189360 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 173
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 9, 30

Conread position: 560-816
Cow position: chr18:49038635-49038395 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 145, 22

Conread position: 562-797
Cow position: chr18:50632261-50632490 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 168
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 23, 60

Conread position: 563-807
Cow position: chr18:44917934-44917699 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 171
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 49, 17

Conread position: 564-816
Cow position: chr18:15613684-15613927 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 141, 28

Conread position: 565-812
Cow position: chr18:25598053-25598301 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 170
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 140, 56

Conread position: 571-816
Cow position: chr18:9974156-9974395 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 167
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 50, 0

Conread position: 573-816
Cow position: chr18:1954407-1954657 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 172
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 12, 49

Conread position: 574-806
Cow position: chr18:52251683-52251914 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 154
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 78, 47

Conread position: 574-812
Cow position: chr18:33896243-33896487 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 167
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 73, 42

Conread position: 574-814
Cow position: chr18:8949627-8949858 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 12, 29

Conread position: 574-814
Cow position: chr18:15517003-15517236 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 13, 18

Conread position: 574-816
Cow position: chr18:43796788-43797020 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 163
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 47, 0

Conread position: 575-811
Cow position: chr18:31082173-31082410 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 157
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 64, 46

Conread position: 575-816
Cow position: chr18:11691236-11691476 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 166
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 111, 46

Conread position: 575-816
Cow position: chr18:38937990-38937755 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 161
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 50, 0

Conread position: 576-802
Cow position: chr18:45903726-45903947 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 156
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 15, 46

Conread position: 576-806
Cow position: chr18:2773217-2773449 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 157
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 9, 48

Conread position: 576-806
Cow position: chr18:2776720-2776952 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 154
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 9, 48

Conread position: 576-809
Cow position: chr18:9010875-9010646 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 15, 46

Conread position: 576-813
Cow position: chr18:17390820-17391057 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 9, 47

Conread position: 576-816
Cow position: chr18:4884348-4884584 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 6, 47

Conread position: 577-806
Cow position: chr18:42479411-42479643 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 158
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 45

Conread position: 579-812
Cow position: chr18:34219740-34219986 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 39, 46

Conread position: 579-814
Cow position: chr18:49015281-49015066 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 582-805
Cow position: chr18:35534987-35535202 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 156
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 590-800
Cow position: chr18:9366077-9365868 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 167, 31

Conread position: 590-806
Cow position: chr18:52649184-52649404 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 149
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 57, 31

Conread position: 590-816
Cow position: chr18:12242432-12242209 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 59, 31

Conread position: 591-816
Cow position: chr18:22568914-22569132 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 62, 30

Conread position: 611-816
Cow position: chr18:52414108-52413898 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 51, 10

Conread position: 651-811
Cow position: chr18:25647151-25647310 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 45, 22

Show alignments to all cow chromosomes.