Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037D06.5 |
| Conread position: | 6-327 |
| Cow position: | chr20:22697034-22697359 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 177, 21 |
| Conread position: | 6-564 |
| Cow position: | chr20:13769829-13769271 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 374 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 10-520 |
| Cow position: | chr20:13794004-13793484 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 358 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 10-565 |
| Cow position: | chr20:15293967-15293393 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 10-585 |
| Cow position: | chr20:5536918-5536336 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 385 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 34 |
| Conread position: | 16-370 |
| Cow position: | chr20:8351360-8351722 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 16-544 |
| Cow position: | chr20:35126642-35126092 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 355 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 53, 126 |
| Conread position: | 16-561 |
| Cow position: | chr20:8972192-8972762 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 366 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 127, 47 |
| Conread position: | 16-561 |
| Cow position: | chr20:24614928-24615478 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 360 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 133, 122 |
| Conread position: | 16-563 |
| Cow position: | chr20:29950505-29949942 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 367 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-565 |
| Cow position: | chr20:12436419-12437010 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 388 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-565 |
| Cow position: | chr20:13764875-13764308 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 373 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-565 |
| Cow position: | chr20:17659764-17660330 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 374 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-565 |
| Cow position: | chr20:23800864-23800298 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 365 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 20, 28 |
| Conread position: | 16-566 |
| Cow position: | chr20:19439893-19439326 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 372 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 16-585 |
| Cow position: | chr20:21916615-21916028 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 26 |
| Conread position: | 16-601 |
| Cow position: | chr20:10853383-10853973 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 385 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 204, 20 |
| Conread position: | 17-565 |
| Cow position: | chr20:23467690-23468251 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 372 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 17-582 |
| Cow position: | chr20:15095913-15096500 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 376 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 18-564 |
| Cow position: | chr20:41363668-41364225 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 372 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 55-565 |
| Cow position: | chr20:25848890-25849410 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 21, 83 |
| Conread position: | 55-592 |
| Cow position: | chr20:20752880-20753420 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 349 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 56-567 |
| Cow position: | chr20:18968420-18967908 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 350 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 57-476 |
| Cow position: | chr20:13677909-13678343 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 280 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 78 |
| Conread position: | 57-568 |
| Cow position: | chr20:42060593-42061116 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 333 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 77 |
| Conread position: | 58-584 |
| Cow position: | chr20:9547585-9547042 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 358 |
| Conread position: | 60-568 |
| Cow position: | chr20:5937234-5937746 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 338 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 33, 81 |
| Conread position: | 62-373 |
| Cow position: | chr20:19214903-19214591 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 35, 44 |
| Conread position: | 63-370 |
| Cow position: | chr20:19341759-19341442 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 80, 73 |
| Conread position: | 63-567 |
| Cow position: | chr20:925482-926005 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 13 |
| Conread position: | 75-561 |
| Cow position: | chr20:3306803-3306321 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 331 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 108, 28 |
| Conread position: | 81-563 |
| Cow position: | chr20:32121228-32120744 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 321 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 106-565 |
| Cow position: | chr20:28162716-28162236 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 304 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 54, 319 |
| Conread position: | 256-565 |
| Cow position: | chr20:27870938-27870619 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 102, 212 |
| Conread position: | 269-609 |
| Cow position: | chr20:21395628-21395289 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 82, 186 |
| Conread position: | 273-609 |
| Cow position: | chr20:30163554-30163889 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 122, 61 |
| Conread position: | 323-582 |
| Cow position: | chr20:12570153-12569895 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 139, 40 |
| Conread position: | 373-568 |
| Cow position: | chr20:9119120-9119314 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 158, 96 |
| Conread position: | 412-582 |
| Cow position: | chr20:19341194-19341026 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 509-815 |
| Cow position: | chr20:31739906-31740209 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 531-816 |
| Cow position: | chr20:2819840-2819554 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 12, 25 |
| Conread position: | 541-804 |
| Cow position: | chr20:32847619-32847366 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 164, 41 |
| Conread position: | 542-750 |
| Cow position: | chr20:27315257-27315053 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 553-806 |
| Cow position: | chr20:5365199-5364949 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 52 |
| Conread position: | 553-816 |
| Cow position: | chr20:14807148-14806897 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 556-811 |
| Cow position: | chr20:7425929-7426182 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 33, 69 |
| Conread position: | 556-815 |
| Cow position: | chr20:8555999-8556258 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 27, 71 |
| Conread position: | 558-816 |
| Cow position: | chr20:28982958-28982711 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 559-816 |
| Cow position: | chr20:20158393-20158145 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 560-774 |
| Cow position: | chr20:26040835-26041047 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 14, 62 |
| Conread position: | 560-814 |
| Cow position: | chr20:26996794-26996542 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 122, 31 |
| Conread position: | 573-757 |
| Cow position: | chr20:16977590-16977776 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 100, 18 |
| Conread position: | 573-806 |
| Cow position: | chr20:7737984-7738212 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 13, 50 |
| Conread position: | 573-815 |
| Cow position: | chr20:12581708-12581944 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 574-812 |
| Cow position: | chr20:39398730-39398495 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 12, 48 |
| Conread position: | 574-816 |
| Cow position: | chr20:2298547-2298777 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 48 |
| Conread position: | 574-816 |
| Cow position: | chr20:18379623-18379388 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 575-806 |
| Cow position: | chr20:8578500-8578268 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 576-816 |
| Cow position: | chr20:3255279-3255048 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 577-814 |
| Cow position: | chr20:23846420-23846654 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 579-789 |
| Cow position: | chr20:19635936-19636140 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 585-804 |
| Cow position: | chr20:12126065-12126283 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 589-816 |
| Cow position: | chr20:5702954-5702734 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 104, 32 |
| Conread position: | 590-812 |
| Cow position: | chr20:25009402-25009618 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 590-814 |
| Cow position: | chr20:11751885-11751667 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 31 |
| Conread position: | 590-816 |
| Cow position: | chr20:3148912-3148693 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 590-816 |
| Cow position: | chr20:33623328-33623543 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 210, 59 |
| Conread position: | 592-814 |
| Cow position: | chr20:28605435-28605221 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 599-816 |
| Cow position: | chr20:22065283-22065081 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 617-814 |
| Cow position: | chr20:20203419-20203230 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 618-816 |
| Cow position: | chr20:12239482-12239672 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 168, 42 |
| Conread position: | 620-815 |
| Cow position: | chr20:32463323-32463510 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
Show alignments to all cow chromosomes.