Cow genome map

Conread name: Ss1.1-Pig4-TMW8037D06.5

Conread position: 6-622
Cow position: chr21:30597366-30597998 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 415
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 11, 38

Conread position: 10-523
Cow position: chr21:33711231-33710713 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 10-564
Cow position: chr21:31251089-31250535 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 373
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 126, 29

Conread position: 10-566
Cow position: chr21:2512947-2512371 (view UCSC Genome Browser custom track)
Alignm length: 585
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 10-566
Cow position: chr21:26635059-26635635 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 34

Conread position: 10-567
Cow position: chr21:35775006-35774447 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 54

Conread position: 16-320
Cow position: chr21:37124265-37124564 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 20, 27

Conread position: 16-367
Cow position: chr21:13195132-13194777 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 248
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 60, 47

Conread position: 16-370
Cow position: chr21:42915895-42915534 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 230
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 20, 27

Conread position: 16-549
Cow position: chr21:37373317-37372773 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 357
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 20, 38

Conread position: 16-556
Cow position: chr21:19612850-19612290 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-564
Cow position: chr21:31514226-31514790 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr21:2879737-2880298 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr21:3780865-3780297 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 369
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 39, 23

Conread position: 16-565
Cow position: chr21:5019233-5018663 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr21:30563754-30563197 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 367
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 20, 27

Conread position: 16-565
Cow position: chr21:47647424-47646857 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 367
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 20, 48

Conread position: 16-566
Cow position: chr21:148011-147446 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 38

Conread position: 16-566
Cow position: chr21:47943037-47942471 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 360
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 39, 23

Conread position: 16-578
Cow position: chr21:996750-997326 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 370
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 122, 54

Conread position: 16-585
Cow position: chr21:28614409-28613829 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 365
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 20, 137

Conread position: 17-473
Cow position: chr21:14644930-14645395 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 46

Conread position: 17-564
Cow position: chr21:26837278-26836708 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 381
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 38, 22

Conread position: 17-567
Cow position: chr21:13298668-13298119 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 375
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 132, 46

Conread position: 18-526
Cow position: chr21:4784119-4784622 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 330
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 89, 45

Conread position: 18-565
Cow position: chr21:27068875-27069437 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 25

Conread position: 18-566
Cow position: chr21:39427154-39426594 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 36

Conread position: 50-504
Cow position: chr21:24646922-24646467 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 303
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 21, 91

Conread position: 50-565
Cow position: chr21:2418259-2417735 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 344
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 106, 22

Conread position: 55-591
Cow position: chr21:21917276-21916743 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 349
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 94, 22

Conread position: 56-627
Cow position: chr21:468950-468353 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 386
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 100, 61

Conread position: 57-566
Cow position: chr21:11156769-11157274 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 336
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 26, 57

Conread position: 58-563
Cow position: chr21:25125651-25125130 (view UCSC Genome Browser custom track)
Alignm length: 529
Alignm identity: 334
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 100, 46

Conread position: 58-585
Cow position: chr21:34655876-34655338 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 351
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 91, 23

Conread position: 62-565
Cow position: chr21:10568744-10568227 (view UCSC Genome Browser custom track)
Alignm length: 528
Alignm identity: 338
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 96, 264

Conread position: 63-331
Cow position: chr21:45001294-45001024 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 196
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 76, 19

Conread position: 63-542
Cow position: chr21:25815524-25816006 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 305
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 11, 105

Conread position: 63-561
Cow position: chr21:13185659-13185158 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 328
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 36, 77

Conread position: 63-565
Cow position: chr21:40269625-40270148 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 417

Conread position: 63-566
Cow position: chr21:21139754-21139256 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 74

Conread position: 63-566
Cow position: chr21:22751400-22751903 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 325
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 95, 74

Conread position: 70-587
Cow position: chr21:4587975-4588510 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 342
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 66, 36

Conread position: 75-441
Cow position: chr21:4712716-4712362 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 233
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 74, 30

Conread position: 75-464
Cow position: chr21:34594011-34594414 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 266
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 74, 25

Conread position: 75-548
Cow position: chr21:30163045-30163526 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 315
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 74, 62

Conread position: 77-566
Cow position: chr21:6413992-6414502 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 60

Conread position: 81-541
Cow position: chr21:34034971-34035435 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 313
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 56, 153

Conread position: 123-371
Cow position: chr21:28999704-28999445 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 179
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 8, 156

Conread position: 179-612
Cow position: chr21:24084888-24085329 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 285
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 167, 46

Conread position: 180-557
Cow position: chr21:405250-405625 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 257
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 58, 31

Conread position: 180-565
Cow position: chr21:10851990-10851600 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 257
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 171, 31

Conread position: 182-567
Cow position: chr21:43804617-43805016 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 267
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 33, 230

Conread position: 228-549
Cow position: chr21:21942719-21943044 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 205
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 132, 20

Conread position: 229-566
Cow position: chr21:38802306-38801959 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 233
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 128, 185

Conread position: 229-620
Cow position: chr21:23709096-23708689 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 40

Conread position: 231-602
Cow position: chr21:5839337-5839709 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 254
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 98, 125

Conread position: 234-569
Cow position: chr21:21025319-21024988 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 218
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 15, 91

Conread position: 236-609
Cow position: chr21:26849168-26849534 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 261
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 113, 12

Conread position: 239-567
Cow position: chr21:3974191-3974516 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 213
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 32, 137

Conread position: 249-606
Cow position: chr21:11241406-11241039 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 227
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 90, 349

Conread position: 253-593
Cow position: chr21:598449-598800 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 233
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 101, 73

Conread position: 256-564
Cow position: chr21:3141848-3142149 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 200
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 102, 121

Conread position: 256-565
Cow position: chr21:33254023-33253706 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 213
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 102, 210

Conread position: 256-567
Cow position: chr21:41405158-41404834 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 211
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 102, 152

Conread position: 265-565
Cow position: chr21:1286382-1286691 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 214
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 93, 141

Conread position: 321-566
Cow position: chr21:34822451-34822688 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 165
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 504-814
Cow position: chr21:10004554-10004853 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 199
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 521-805
Cow position: chr21:8430771-8431059 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 189
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 44, 10

Conread position: 521-806
Cow position: chr21:47718983-47719259 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 189
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 58, 21

Conread position: 535-816
Cow position: chr21:18059653-18059931 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 191
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 5, 19

Conread position: 536-810
Cow position: chr21:71888-71623 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 188
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 33, 0

Conread position: 546-806
Cow position: chr21:26018679-26018419 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 179
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 39, 77

Conread position: 546-811
Cow position: chr21:19195866-19196129 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 178
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 24

Conread position: 546-812
Cow position: chr21:19703026-19702765 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 183
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 216, 75

Conread position: 546-815
Cow position: chr21:34654361-34654104 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 186
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 259, 24

Conread position: 548-773
Cow position: chr21:8506250-8506473 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 163
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 20, 47

Conread position: 556-816
Cow position: chr21:40266414-40266155 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 178
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 24, 69

Conread position: 557-815
Cow position: chr21:32559083-32559332 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 181
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 7, 67

Conread position: 559-816
Cow position: chr21:27677764-27677514 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 167
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 563-810
Cow position: chr21:30222618-30222381 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 165
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 139, 17

Conread position: 563-810
Cow position: chr21:39394029-39393784 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 171
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 60

Conread position: 566-816
Cow position: chr21:643599-643356 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 23, 47

Conread position: 574-773
Cow position: chr21:8509167-8509361 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 13, 18

Conread position: 574-793
Cow position: chr21:25012347-25012135 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 152
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 48

Conread position: 574-814
Cow position: chr21:33982546-33982777 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 166
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 236, 47

Conread position: 575-812
Cow position: chr21:868651-868890 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 159
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 10, 47

Conread position: 575-813
Cow position: chr21:802055-802284 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 164
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 10, 73

Conread position: 575-816
Cow position: chr21:16498783-16498550 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 16, 47

Conread position: 576-813
Cow position: chr21:641850-641620 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 35, 42

Conread position: 576-813
Cow position: chr21:32297242-32297486 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 162
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 82, 45

Conread position: 576-815
Cow position: chr21:17252712-17252947 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 100, 12

Conread position: 577-816
Cow position: chr21:10817302-10817061 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 163
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 12, 47

Conread position: 579-806
Cow position: chr21:11644703-11644926 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 158
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 42, 0

Conread position: 582-816
Cow position: chr21:29069062-29069298 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 166
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 9, 40

Conread position: 586-815
Cow position: chr21:19240622-19240842 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 154
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 590-812
Cow position: chr21:23822404-23822191 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 64, 37

Conread position: 590-815
Cow position: chr21:24858568-24858347 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 591-816
Cow position: chr21:41287545-41287762 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 30, 0

Conread position: 592-807
Cow position: chr21:24875602-24875391 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 160, 29

Conread position: 618-815
Cow position: chr21:29213930-29214129 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 148
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 62, 35

Conread position: 627-816
Cow position: chr21:9990727-9990540 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 138
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 77, 46

Conread position: 649-816
Cow position: chr21:29485175-29485012 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 121
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 651-812
Cow position: chr21:42384702-42384542 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 24, 0

Show alignments to all cow chromosomes.