Cow genome map
| Conread name: | Ss1.1-Pig4-TMW8037D06.5 |
| Conread position: | 6-623 |
| Cow position: | chr23:36029462-36030089 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 415 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 11, 34 |
| Conread position: | 10-532 |
| Cow position: | chr23:32350839-32351382 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 352 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 7, 54 |
| Conread position: | 11-566 |
| Cow position: | chr23:7314832-7314257 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 32 |
| Conread position: | 15-565 |
| Cow position: | chr23:31164718-31164153 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 369 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 128, 48 |
| Conread position: | 16-465 |
| Cow position: | chr23:29450419-29450882 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 293 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-544 |
| Cow position: | chr23:14972041-14972601 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 362 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 133, 47 |
| Conread position: | 16-556 |
| Cow position: | chr23:28219350-28218782 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-561 |
| Cow position: | chr23:4890602-4890042 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 371 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-561 |
| Cow position: | chr23:21821410-21821938 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 356 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 29, 38 |
| Conread position: | 16-564 |
| Cow position: | chr23:3879171-3879737 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 370 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-565 |
| Cow position: | chr23:964586-965146 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 379 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-565 |
| Cow position: | chr23:4638681-4639242 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-565 |
| Cow position: | chr23:15527497-15526925 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-565 |
| Cow position: | chr23:22145390-22145958 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 368 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-567 |
| Cow position: | chr23:20154306-20154880 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 366 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-582 |
| Cow position: | chr23:7044295-7044853 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 366 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 20, 27 |
| Conread position: | 16-585 |
| Cow position: | chr23:2793355-2793928 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 38 |
| Conread position: | 17-561 |
| Cow position: | chr23:15875655-15876214 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 355 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 19, 26 |
| Conread position: | 18-455 |
| Cow position: | chr23:22369196-22369641 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 46 |
| Conread position: | 18-550 |
| Cow position: | chr23:28304829-28304281 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 25 |
| Conread position: | 18-565 |
| Cow position: | chr23:2759814-2759249 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 119 |
| Conread position: | 18-565 |
| Cow position: | chr23:15178977-15178420 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 362 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 131, 45 |
| Conread position: | 52-565 |
| Cow position: | chr23:5872691-5873225 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 11 |
| Conread position: | 53-566 |
| Cow position: | chr23:41141347-41141880 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 10 |
| Conread position: | 54-505 |
| Cow position: | chr23:22942106-22942563 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 297 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 19 |
| Conread position: | 55-358 |
| Cow position: | chr23:11074607-11074913 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 19, 83 |
| Conread position: | 56-565 |
| Cow position: | chr23:15218010-15218533 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 345 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 104, 148 |
| Conread position: | 56-582 |
| Cow position: | chr23:1011944-1012476 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 351 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 57-612 |
| Cow position: | chr23:30564281-30563711 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 83 |
| Conread position: | 57-632 |
| Cow position: | chr23:29646467-29647063 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 379 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 58-462 |
| Cow position: | chr23:18126366-18126803 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 10, 74 |
| Conread position: | 58-565 |
| Cow position: | chr23:16497378-16497896 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 337 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 102, 79 |
| Conread position: | 59-560 |
| Cow position: | chr23:31648160-31648677 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 341 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 10, 73 |
| Conread position: | 94-370 |
| Cow position: | chr23:24108589-24108300 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 143-550 |
| Cow position: | chr23:14263637-14263235 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 15, 145 |
| Conread position: | 180-565 |
| Cow position: | chr23:11780517-11780131 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 159, 31 |
| Conread position: | 229-474 |
| Cow position: | chr23:12547878-12547626 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 61, 5 |
| Conread position: | 229-566 |
| Cow position: | chr23:23172470-23172125 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 128, 146 |
| Conread position: | 268-564 |
| Cow position: | chr23:4514138-4513831 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 91, 146 |
| Conread position: | 269-549 |
| Cow position: | chr23:18105201-18105484 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 87, 60 |
| Conread position: | 278-567 |
| Cow position: | chr23:38692136-38691837 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 79, 136 |
| Conread position: | 280-409 |
| Cow position: | chr23:1950267-1950140 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 36 |
| Conread position: | 280-603 |
| Cow position: | chr23:21539709-21539379 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 54, 125 |
| Conread position: | 376-555 |
| Cow position: | chr23:19949051-19949228 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 86, 26 |
| Conread position: | 530-812 |
| Cow position: | chr23:4968276-4968551 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 40, 87 |
| Conread position: | 538-812 |
| Cow position: | chr23:40995405-40995146 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 540-816 |
| Cow position: | chr23:24966221-24966494 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 8, 47 |
| Conread position: | 548-806 |
| Cow position: | chr23:385076-385330 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 120, 43 |
| Conread position: | 554-815 |
| Cow position: | chr23:307689-307424 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 8, 71 |
| Conread position: | 555-816 |
| Cow position: | chr23:5451548-5451295 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 116, 66 |
| Conread position: | 556-814 |
| Cow position: | chr23:2471230-2470973 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 155, 65 |
| Conread position: | 557-792 |
| Cow position: | chr23:9131740-9131969 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 148, 65 |
| Conread position: | 557-815 |
| Cow position: | chr23:8698649-8698391 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 14 |
| Conread position: | 557-816 |
| Cow position: | chr23:5426661-5426401 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 109, 64 |
| Conread position: | 558-814 |
| Cow position: | chr23:4646728-4646484 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 558-816 |
| Cow position: | chr23:1614433-1614689 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 178 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 7, 64 |
| Conread position: | 558-816 |
| Cow position: | chr23:16880947-16881194 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 560-816 |
| Cow position: | chr23:11225072-11224824 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 20 |
| Conread position: | 561-810 |
| Cow position: | chr23:20744361-20744618 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 61 |
| Conread position: | 562-816 |
| Cow position: | chr23:3967336-3967594 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 104, 11 |
| Conread position: | 573-789 |
| Cow position: | chr23:27849201-27848992 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 573-816 |
| Cow position: | chr23:25990229-25990468 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 12, 49 |
| Conread position: | 574-800 |
| Cow position: | chr23:17597629-17597411 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 131, 37 |
| Conread position: | 574-815 |
| Cow position: | chr23:1883601-1883364 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 11, 49 |
| Conread position: | 574-815 |
| Cow position: | chr23:20093037-20093272 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 574-816 |
| Cow position: | chr23:534432-534199 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 575-812 |
| Cow position: | chr23:16582701-16582937 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 46 |
| Conread position: | 576-806 |
| Cow position: | chr23:2501651-2501875 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 576-816 |
| Cow position: | chr23:12363413-12363649 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 9, 46 |
| Conread position: | 577-814 |
| Cow position: | chr23:34356845-34356612 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 128, 44 |
| Conread position: | 581-815 |
| Cow position: | chr23:22587079-22586850 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 11, 43 |
| Conread position: | 582-805 |
| Cow position: | chr23:35965348-35965126 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 123, 39 |
| Conread position: | 584-816 |
| Cow position: | chr23:24685437-24685213 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 586-813 |
| Cow position: | chr23:17486632-17486851 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 209, 35 |
| Conread position: | 588-813 |
| Cow position: | chr23:2359069-2358852 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 590-806 |
| Cow position: | chr23:5795667-5795458 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 595-816 |
| Cow position: | chr23:21452546-21452760 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 618-807 |
| Cow position: | chr23:22238653-22238844 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 618-816 |
| Cow position: | chr23:1981504-1981690 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 635-815 |
| Cow position: | chr23:348801-348978 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 652-812 |
| Cow position: | chr23:5707124-5706966 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
Show alignments to all cow chromosomes.