Cow genome map

Conread name: Ss1.1-Pig4-TMW8037D06.5

Conread position: 6-333
Cow position: chr24:6249865-6250194 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 224
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 130, 57

Conread position: 6-567
Cow position: chr24:4413543-4414106 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 366
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 11, 38

Conread position: 10-566
Cow position: chr24:7063550-7062979 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 30

Conread position: 13-567
Cow position: chr24:6344923-6344376 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 357
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 173, 50

Conread position: 13-601
Cow position: chr24:22973073-22972464 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 396
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 23, 30

Conread position: 16-317
Cow position: chr24:11151123-11151429 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 20, 27

Conread position: 16-467
Cow position: chr24:40469371-40469821 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 296
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 167, 47

Conread position: 16-524
Cow position: chr24:36557564-36558073 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 319
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 144, 65

Conread position: 16-565
Cow position: chr24:146604-147174 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 20

Conread position: 16-565
Cow position: chr24:19835406-19834842 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 370
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 20, 27

Conread position: 16-566
Cow position: chr24:13190170-13189616 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 361
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 27

Conread position: 16-566
Cow position: chr24:13234253-13233695 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 40

Conread position: 16-567
Cow position: chr24:39491636-39492203 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 380
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 27, 23

Conread position: 16-576
Cow position: chr24:12088206-12087626 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 373
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 133, 54

Conread position: 16-585
Cow position: chr24:29189294-29188713 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 385
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 54, 23

Conread position: 16-620
Cow position: chr24:14870320-14870949 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 390
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 20, 38

Conread position: 17-565
Cow position: chr24:6338387-6337827 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 26

Conread position: 18-565
Cow position: chr24:16560307-16560876 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 370
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 37, 21

Conread position: 19-565
Cow position: chr24:5776405-5776962 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 26

Conread position: 50-585
Cow position: chr24:7089029-7089575 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 341
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 16, 24

Conread position: 55-603
Cow position: chr24:6130769-6130211 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 132

Conread position: 56-370
Cow position: chr24:1493517-1493203 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 13, 33

Conread position: 57-564
Cow position: chr24:33935354-33934827 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 341
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 86, 80

Conread position: 58-565
Cow position: chr24:12333772-12334292 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 335
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 11, 204

Conread position: 60-581
Cow position: chr24:6354098-6353552 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 352
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 72, 304

Conread position: 60-582
Cow position: chr24:6667800-6668322 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 339
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 83, 76

Conread position: 63-367
Cow position: chr24:25438561-25438246 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 210
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 74, 18

Conread position: 63-565
Cow position: chr24:13179064-13179581 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 329
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 39, 25

Conread position: 75-566
Cow position: chr24:19703435-19702931 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 325
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 81, 318

Conread position: 83-600
Cow position: chr24:4044328-4044854 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 347
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 51, 30

Conread position: 88-568
Cow position: chr24:24074350-24074811 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 315
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 55, 43

Conread position: 89-563
Cow position: chr24:17370102-17370558 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 298
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 35, 101

Conread position: 114-600
Cow position: chr24:35868680-35869170 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 309
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 29, 23

Conread position: 127-563
Cow position: chr24:37199021-37199464 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 295
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 12, 293

Conread position: 180-425
Cow position: chr24:6272764-6273005 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 170
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 176, 45

Conread position: 180-567
Cow position: chr24:5887425-5887820 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 256
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 35, 48

Conread position: 228-561
Cow position: chr24:8754098-8753768 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 240
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 15, 11

Conread position: 229-355
Cow position: chr24:1098719-1098593 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 98
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 229-474
Cow position: chr24:6658711-6658957 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 160
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 129, 154

Conread position: 229-550
Cow position: chr24:42583987-42584311 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 127, 88

Conread position: 229-564
Cow position: chr24:12204561-12204902 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 225
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 129, 5

Conread position: 229-566
Cow position: chr24:44019292-44018945 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 238
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 128, 185

Conread position: 229-582
Cow position: chr24:6323566-6323934 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 247
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 9, 273

Conread position: 231-566
Cow position: chr24:310649-310304 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 238
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 126, 183

Conread position: 236-561
Cow position: chr24:29352081-29352406 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 120, 39

Conread position: 248-564
Cow position: chr24:12239049-12238722 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 210
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 97, 0

Conread position: 248-569
Cow position: chr24:38639283-38638961 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 223
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 108, 154

Conread position: 256-559
Cow position: chr24:6036745-6036433 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 205
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 100, 150

Conread position: 377-601
Cow position: chr24:25437902-25437689 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 0

Conread position: 502-806
Cow position: chr24:27725755-27726060 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 195
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 43, 24

Conread position: 520-811
Cow position: chr24:17104340-17104624 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 191
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 24, 52

Conread position: 523-809
Cow position: chr24:13948354-13948072 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 194
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 11, 31

Conread position: 537-813
Cow position: chr24:37823742-37823473 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 55, 88

Conread position: 543-816
Cow position: chr24:39523238-39523505 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 181
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 31, 75

Conread position: 549-789
Cow position: chr24:36286772-36286538 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 159
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 0

Conread position: 549-804
Cow position: chr24:30236072-30235827 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 553-810
Cow position: chr24:29984792-29985037 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 172
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 249, 27

Conread position: 556-812
Cow position: chr24:28303163-28303419 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 172
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 29, 66

Conread position: 559-806
Cow position: chr24:28510982-28510749 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 12, 0

Conread position: 559-816
Cow position: chr24:1269978-1269728 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 181
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 18, 68

Conread position: 560-786
Cow position: chr24:3412873-3412655 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 159
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 46, 26

Conread position: 560-811
Cow position: chr24:22133355-22133118 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 174
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 11

Conread position: 560-814
Cow position: chr24:11887344-11887105 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 172
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 564-814
Cow position: chr24:230471-230224 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 21, 58

Conread position: 565-816
Cow position: chr24:27844344-27844586 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 171
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 20, 9

Conread position: 566-803
Cow position: chr24:21834775-21835004 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 160
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 55, 0

Conread position: 574-808
Cow position: chr24:5632848-5633081 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 158
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 75, 47

Conread position: 574-815
Cow position: chr24:27285004-27284764 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 81, 47

Conread position: 574-816
Cow position: chr24:28234220-28233987 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 575-816
Cow position: chr24:2402198-2402425 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 166
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 46, 0

Conread position: 575-816
Cow position: chr24:37974804-37975040 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 237, 72

Conread position: 590-797
Cow position: chr24:25122501-25122306 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 31, 0

Conread position: 590-811
Cow position: chr24:5360875-5360666 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 154
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 590-814
Cow position: chr24:35675695-35675483 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 0

Conread position: 595-806
Cow position: chr24:15288986-15288779 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 143
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 595-806
Cow position: chr24:28496423-28496630 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 618-812
Cow position: chr24:18356916-18357106 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 134
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 0

Conread position: 618-814
Cow position: chr24:17311087-17311273 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 141
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 36, 0

Conread position: 649-816
Cow position: chr24:39791647-39791483 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 653-816
Cow position: chr24:28043080-28042917 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 10

Show alignments to all cow chromosomes.